{ "type": "genome", "identifier": "GCF_001939045.1", "organism": "Rhizobium oryziradicis", "title": "Rhizobium oryziradicis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001939045.1", "bioproject": "PRJNA224116", "biosample": "SAMN05829247", "wgs_master": "MKIM00000000.1", "refseq_category": "reference genome", "taxid": "1867956", "species_taxid": "1867956", "organism_name": "Rhizobium oryziradicis", "infraspecific_name": "strain=N19", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/06", "asm_name": "ASM193904v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_001939045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/939/045/GCF_001939045.1_ASM193904v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5156254", "genome_size_ungapped": "5156165", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001939045.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "4706", "protein_coding_gene_count": "4568", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-06", "dateModified": "2017-01-06", "datePublished": "2017-01-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium oryziradicis" ], "sample_taxid": [ "1867956" ], "sample_host_organism": [ "rice" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Ciceribacter selenitireducens", "strain": "strain=ATCC BAA-1503", "accession": "GCA_000518785.1", "taxid": 448181, "species_taxid": 448181, "relation_to_type": "type", "validated": true, "ani": 77.6309, "matched_fragments": 334, "total_fragments": 1705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rhizophilum", "strain": "strain=7209-2", "accession": "GCA_004912145.1", "taxid": 1850373, "species_taxid": 1850373, "relation_to_type": "type", "validated": true, "ani": 77.5313, "matched_fragments": 314, "total_fragments": 1705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium wuzhouense", "strain": "strain=W44", "accession": "GCA_003205195.1", "taxid": 1986026, "species_taxid": 1986026, "relation_to_type": "type", "validated": true, "ani": 77.4454, "matched_fragments": 343, "total_fragments": 1705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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