{ "type": "genome", "identifier": "GCF_001939065.1", "organism": "Exiguobacterium indicum HHS 31", "title": "Exiguobacterium indicum HHS 31", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centre for Cellular and Molecular Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001939065.1", "bioproject": "PRJNA224116", "biosample": "SAMN03159272", "wgs_master": "MPSZ00000000.1", "refseq_category": "reference genome", "taxid": "1358421", "species_taxid": "296995", "organism_name": "Exiguobacterium indicum HHS 31", "infraspecific_name": "strain=HHS 31", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/06", "asm_name": "ASM193906v1", "asm_submitter": "Centre for Cellular and Molecular Biology", "gbrs_paired_asm": "GCA_001939065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/939/065/GCF_001939065.1_ASM193906v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3244965", "genome_size_ungapped": "3244965", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001939065.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3356", "protein_coding_gene_count": "3270", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-06", "dateModified": "2017-01-06", "datePublished": "2017-01-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Exiguobacterium indicum HHS 31" ], "sample_taxid": [ "1358421" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Himalayan mountain ranges" ], "sample_host_location_id": [], "data_size": "0.922 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3244965", "Number of Sequences": "23", "Longest Sequences (bp)": "1567940", "N50 (bp)": "283671", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.6", "Number of CDSs": "3329", "Average Protein Length": "290.0", "Coding Ratio (%)": "89.3", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Exiguobacterium indicum", "strain": "strain=HHS 31", "accession": "GCA_001939065.1", "taxid": 296995, "species_taxid": 296995, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1067, "total_fragments": 1068, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Exiguobacterium enclense", "strain": "strain=NIO-1109", "accession": "GCA_900096925.1", "taxid": 1017277, "species_taxid": 1017277, "relation_to_type": "type", "validated": true, "ani": 97.8454, "matched_fragments": 1024, "total_fragments": 1068, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Exiguobacterium enclense", "strain": "strain=NIO-1109", "accession": "GCA_001456895.1", "taxid": 1017277, "species_taxid": 1017277, "relation_to_type": "type", "validated": true, "ani": 97.8454, "matched_fragments": 1024, "total_fragments": 1068, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Exiguobacterium acetylicum", "strain": "strain=DSM 20416", "accession": "GCA_000702605.1", "taxid": 41170, "species_taxid": 41170, "relation_to_type": "suspected-type", "validated": true, "ani": 94.0919, "matched_fragments": 942, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium oxidotolerans", "strain": "strain=JCM 12280", "accession": "GCA_000702625.1", "taxid": 223958, "species_taxid": 223958, "relation_to_type": "type", "validated": true, "ani": 81.4446, "matched_fragments": 535, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium undae", "strain": "strain=DSM 14481", "accession": "GCA_000620805.1", "taxid": 169177, "species_taxid": 169177, "relation_to_type": "type", "validated": true, "ani": 81.0157, "matched_fragments": 573, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium artemiae", "strain": "strain=9AN", "accession": "GCA_025234645.1", "taxid": 340145, "species_taxid": 340145, "relation_to_type": "type", "validated": true, "ani": 81.0033, "matched_fragments": 523, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium flavidum", "strain": "strain=HF60", "accession": "GCA_003344535.1", "taxid": 2184695, "species_taxid": 2184695, "relation_to_type": "type", "validated": true, "ani": 78.9588, "matched_fragments": 306, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium qingdaonense", "strain": "strain=S82", "accession": "GCA_018617855.1", "taxid": 2751251, "species_taxid": 2751251, "relation_to_type": "type", "validated": true, "ani": 77.5875, "matched_fragments": 103, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001939065.1", "gtdb_species": "s__Exiguobacterium_A indicum", "ani": 100.0, "matched_fragments": 1067, "total_fragments": 1068, 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