{ "type": "genome", "identifier": "GCF_001940455.1", "organism": "Actinokineospora bangkokensis", "title": "Actinokineospora bangkokensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Freiburg", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001940455.1", "bioproject": "PRJNA224116", "biosample": "SAMN05860870", "wgs_master": "MKQR00000000.1", "refseq_category": "reference genome", "taxid": "1193682", "species_taxid": "1193682", "organism_name": "Actinokineospora bangkokensis", "infraspecific_name": "strain=44EHW", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/09", "asm_name": "ASM194045v1", "asm_submitter": "University of Freiburg", "gbrs_paired_asm": "GCA_001940455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/940/455/GCF_001940455.1_ASM194045v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7453713", "genome_size_ungapped": "7410921", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001940455.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "6429", "protein_coding_gene_count": "6322", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-09", "dateModified": "2017-01-09", "datePublished": "2017-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinokineospora bangkokensis" ], "sample_taxid": [ "1193682" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Bangkok" ], "sample_host_location_id": [], "data_size": "1.926 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7453713", "Number of Sequences": "32", "Longest Sequences (bp)": "931456", "N50 (bp)": "522999", "Gap Ratio (%)": "0.574103", "GCcontent (%)": "74.1", "Number of CDSs": "6428", "Average Protein Length": "344.2", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "69", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinokineospora bangkokensis", "strain": "strain=44EHW", "accession": "GCA_001940455.1", "taxid": 1193682, "species_taxid": 1193682, "relation_to_type": "type", "validated": true, "ani": 99.998, "matched_fragments": 2454, "total_fragments": 2466, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinokineospora spheciospongiae", "strain": "strain=EG49", "accession": "GCA_000564855.1", "taxid": 909613, "species_taxid": 909613, "relation_to_type": "type", "validated": true, "ani": 84.2239, "matched_fragments": 1495, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora pegani", "strain": "strain=TRM 65233", "accession": "GCA_009745975.1", "taxid": 2654637, "species_taxid": 2654637, "relation_to_type": "type", "validated": true, "ani": 83.6822, "matched_fragments": 1395, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora iranica", "strain": "strain=IBRC-M 10403", "accession": "GCA_900101685.1", "taxid": 1271860, "species_taxid": 1271860, "relation_to_type": "type", "validated": true, "ani": 81.3792, "matched_fragments": 1185, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 81.362, "matched_fragments": 1212, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora baliensis", "strain": "strain=DSM 45656", "accession": "GCA_016907695.1", "taxid": 547056, "species_taxid": 547056, "relation_to_type": "type", "validated": true, "ani": 81.3288, "matched_fragments": 1195, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora auranticolor", "strain": "strain=YU 961-1", "accession": "GCA_002934265.1", "taxid": 155976, "species_taxid": 155976, "relation_to_type": "type", "validated": true, "ani": 81.0796, "matched_fragments": 1288, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora enzanensis", "strain": "strain=DSM 44649", "accession": "GCA_000374445.1", "taxid": 155975, "species_taxid": 155975, "relation_to_type": "type", "validated": true, "ani": 81.0291, "matched_fragments": 1202, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora fastidiosa", "strain": "strain=JCM 3276", "accession": "GCA_014648415.1", "taxid": 1816, "species_taxid": 1816, "relation_to_type": "type", "validated": true, "ani": 80.9563, "matched_fragments": 1221, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 80.9341, "matched_fragments": 1215, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix algeriensis", "strain": "strain=DSM 44581", "accession": "GCA_016907655.1", "taxid": 173560, "species_taxid": 173560, "relation_to_type": "type", "validated": true, "ani": 78.9332, "matched_fragments": 1122, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix tamanrassetensis", "strain": "strain=CECT 8640", "accession": "GCA_014203665.1", "taxid": 1051531, "species_taxid": 1051531, "relation_to_type": "type", "validated": true, "ani": 78.7854, "matched_fragments": 1029, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix obliqua", "strain": "strain=SC076", "accession": "GCA_019375475.1", "taxid": 2861747, "species_taxid": 2861747, "relation_to_type": "type", "validated": true, "ani": 78.6862, "matched_fragments": 1027, "total_fragments": 2466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": 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"quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }