{
    "type": "genome",
    "identifier": "GCF_001941445.1",
    "organism": "Corynebacterium aquilae DSM 44791",
    "title": "Corynebacterium aquilae DSM 44791",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bielefeld University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001941445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02996496",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1431546",
        "species_taxid": "203263",
        "organism_name": "Corynebacterium aquilae DSM 44791",
        "infraspecific_name": "strain=S-613",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/10",
        "asm_name": "ASM194144v1",
        "asm_submitter": "Bielefeld University",
        "gbrs_paired_asm": "GCA_001941445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/941/445/GCF_001941445.1_ASM194144v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2926437",
        "genome_size_ungapped": "2926437",
        "gc_percent": "61.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001941445.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "2474",
        "protein_coding_gene_count": "2396",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-10",
    "dateModified": "2017-01-10",
    "datePublished": "2017-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium aquilae DSM 44791"
        ],
        "sample_taxid": [
            "1431546"
        ],
        "sample_host_organism": [
            "Aquila chrysaetos"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain: Bird rehabilitation centre in Castilla-La Mancha"
        ],
        "sample_host_location_id": [],
        "data_size": "0.821 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2926437",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2926437",
        "N50 (bp)": "2926437",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.9",
        "Number of CDSs": "2475",
        "Average Protein Length": "333.5",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "12",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corynebacterium aquilae",
                "strain": "strain=S-613",
                "accession": "GCA_001941445.1",
                "taxid": 203263,
                "species_taxid": 203263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 975,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium argentoratense",
                "strain": "strain=DSM 44202",
                "accession": "GCA_000590555.1",
                "taxid": 42817,
                "species_taxid": 42817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9789,
                "matched_fragments": 207,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium vitaeruminis",
                "strain": "strain=DSM 20294",
                "accession": "GCA_000550805.1",
                "taxid": 38305,
                "species_taxid": 38305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6426,
                "matched_fragments": 246,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium frankenforstense",
                "strain": "strain=ST18",
                "accession": "GCA_001941485.1",
                "taxid": 1230998,
                "species_taxid": 1230998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1346,
                "matched_fragments": 212,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium halotolerans",
                "strain": "strain=YIM 70093 = DSM 44683",
                "accession": "GCA_000341345.1",
                "taxid": 225326,
                "species_taxid": 225326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1292,
                "matched_fragments": 244,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium humireducens",
                "strain": "strain=DSM 45392",
                "accession": "GCA_000819445.1",
                "taxid": 1223514,
                "species_taxid": 1223514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9285,
                "matched_fragments": 243,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium efficiens",
                "strain": "strain=YS-314",
                "accession": "GCA_000011305.1",
                "taxid": 152794,
                "species_taxid": 152794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8815,
                "matched_fragments": 195,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium pollutisoli",
                "strain": "strain=VDS11",
                "accession": "GCA_900177745.1",
                "taxid": 1610489,
                "species_taxid": 1610489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.873,
                "matched_fragments": 235,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium occultum",
                "strain": "strain=2039",
                "accession": "GCA_009734425.1",
                "taxid": 2675219,
                "species_taxid": 2675219,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8354,
                "matched_fragments": 195,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium halotolerans",
                "strain": "strain=DSM 44683",
                "accession": "GCA_000688435.1",
                "taxid": 225326,
                "species_taxid": 225326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8188,
                "matched_fragments": 239,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium maris",
                "strain": "strain=DSM 45190",
                "accession": "GCA_000442645.1",
                "taxid": 575200,
                "species_taxid": 575200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7281,
                "matched_fragments": 184,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium humireducens",
                "strain": "strain=NBRC 106098",
                "accession": "GCA_001571025.1",
                "taxid": 1223514,
                "species_taxid": 1223514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7012,
                "matched_fragments": 231,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium efficiens",
                "strain": "strain=YS-314",
                "accession": "GCA_000160795.1",
                "taxid": 152794,
                "species_taxid": 152794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4687,
                "matched_fragments": 188,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium urealyticum",
                "strain": "strain=FDAARGOS_994",
                "accession": "GCA_016127975.1",
                "taxid": 43771,
                "species_taxid": 43771,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3019,
                "matched_fragments": 137,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium ureicelerivorans",
                "strain": "strain=IMMIB RIV-2301",
                "accession": "GCA_000747315.1",
                "taxid": 401472,
                "species_taxid": 401472,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2442,
                "matched_fragments": 130,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium spheniscorum",
                "strain": "strain=CCUG 45512",
                "accession": "GCA_008693095.1",
                "taxid": 185761,
                "species_taxid": 185761,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1781,
                "matched_fragments": 141,
                "total_fragments": 975,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001941445.1",
                "gtdb_species": "s__Corynebacterium aquilae",
                "ani": 100.0,
                "matched_fragments": 975,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002994655.1",
                "gtdb_species": "s__Corynebacterium sp002994655",
                "ani": 80.7731,
                "matched_fragments": 473,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000590555.1",
                "gtdb_species": "s__Corynebacterium argentoratense",
                "ani": 80.0344,
                "matched_fragments": 208,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000550805.1",
                "gtdb_species": "s__Corynebacterium vitaeruminis",
                "ani": 79.6426,
                "matched_fragments": 246,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000341345.1",
                "gtdb_species": "s__Corynebacterium halotolerans",
                "ani": 79.138,
                "matched_fragments": 245,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001941485.1",
                "gtdb_species": "s__Corynebacterium frankenforstense",
                "ani": 79.028,
                "matched_fragments": 209,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016595275.1",
                "gtdb_species": "s__Corynebacterium sp016595275",
                "ani": 78.9947,
                "matched_fragments": 196,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900177745.1",
                "gtdb_species": "s__Corynebacterium pollutisoli",
                "ani": 78.873,
                "matched_fragments": 235,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019209935.1",
                "gtdb_species": "s__Corynebacterium sp019209935",
                "ani": 78.8158,
                "matched_fragments": 199,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.84",
                "min_intra_species_ani": "95.84",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000442645.1",
                "gtdb_species": "s__Corynebacterium maris",
                "ani": 78.7484,
                "matched_fragments": 185,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000011305.1",
                "gtdb_species": "s__Corynebacterium efficiens",
                "ani": 78.7331,
                "matched_fragments": 193,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009734425.1",
                "gtdb_species": "s__Corynebacterium sp009734425",
                "ani": 78.7015,
                "matched_fragments": 193,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113445.1",
                "gtdb_species": "s__Corynebacterium spheniscorum",
                "ani": 78.2765,
                "matched_fragments": 140,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012838985.1",
                "gtdb_species": "s__Corynebacterium sp012838985",
                "ani": 78.0909,
                "matched_fragments": 189,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019114135.1",
                "gtdb_species": "s__Corynebacterium avicola",
                "ani": 77.8887,
                "matched_fragments": 164,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001807265.1",
                "gtdb_species": "s__Corynebacterium sp001807265",
                "ani": 77.8783,
                "matched_fragments": 170,
                "total_fragments": 975,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 37.0,
        "optimum_tmp": 35.173,
        "optimum_ph": 7.292,
        "genome_size": 2926438.0,
        "gc_content": 60.91,
        "coding_genes": 2373.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 51.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "aquilae",
        "DSM",
        "44791"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}