{ "type": "genome", "identifier": "GCF_001941505.1", "organism": "Corynebacterium sphenisci DSM 44792", "title": "Corynebacterium sphenisci DSM 44792", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001941505.1", "bioproject": "PRJNA224116", "biosample": "SAMN02996499", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1437874", "species_taxid": "191493", "organism_name": "Corynebacterium sphenisci DSM 44792", "infraspecific_name": "strain=DSM 44792", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/10", "asm_name": "ASM194150v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_001941505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/941/505/GCF_001941505.1_ASM194150v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2594799", "genome_size_ungapped": "2594799", "gc_percent": "74.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001941505.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2359", "protein_coding_gene_count": "2286", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-10", "dateModified": "2017-01-10", "datePublished": "2017-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium sphenisci DSM 44792" ], "sample_taxid": [ "1437874" ], "sample_host_organism": [ "Spheniscus magellanicus" ], "sample_host_organism_id": [], "sample_host_disease": [], 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"validated": true, "ani": 100.0, "matched_fragments": 864, "total_fragments": 864, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium xerosis", "strain": "strain=NBRC 16721", "accession": "GCA_001552415.1", "taxid": 1725, "species_taxid": 1725, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4311, "matched_fragments": 502, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium freneyi", "strain": "strain=DSM 44506", "accession": "GCA_017876455.1", "taxid": 134034, "species_taxid": 134034, "relation_to_type": "type", "validated": true, "ani": 80.4184, "matched_fragments": 472, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium freneyi", "strain": "strain=FDAARGOS 1426", "accession": "GCA_019047805.1", "taxid": 134034, "species_taxid": 134034, "relation_to_type": "type", "validated": true, "ani": 80.2986, "matched_fragments": 480, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium frankenforstense", "strain": "strain=ST18", "accession": "GCA_001941485.1", "taxid": 1230998, "species_taxid": 1230998, "relation_to_type": "type", "validated": true, "ani": 78.9677, "matched_fragments": 395, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.824, "matched_fragments": 377, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=DSM 44683", "accession": "GCA_000688435.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.6779, "matched_fragments": 371, 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95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 78.2525, "matched_fragments": 248, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bovis", "strain": "strain=FDAARGOS_1052", "accession": "GCA_016128075.1", "taxid": 36808, "species_taxid": 36808, "relation_to_type": "type", "validated": true, "ani": 78.1399, "matched_fragments": 326, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lactis", "strain": "strain=RW2-5", "accession": "GCA_001274895.1", "taxid": 1231000, "species_taxid": 1231000, "relation_to_type": "type", "validated": true, "ani": 77.9964, "matched_fragments": 243, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeddahense", "strain": "strain=JCB", "accession": "GCA_000577555.1", "taxid": 1414719, "species_taxid": 1414719, "relation_to_type": "type", "validated": true, "ani": 77.8833, "matched_fragments": 246, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001941505.1", "gtdb_species": "s__Corynebacterium sphenisci", "ani": 100.0, "matched_fragments": 864, "total_fragments": 864, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001552415.1", "gtdb_species": "s__Corynebacterium xerosis", "ani": 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