{
    "type": "genome",
    "identifier": "GCF_001941685.1",
    "organism": "Pseudovibrio brasiliensis",
    "title": "Pseudovibrio brasiliensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidade Federal do Rio de Janeiro",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001941685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05729687",
        "wgs_master": "MIEL00000000.1",
        "refseq_category": "na",
        "taxid": "1898042",
        "species_taxid": "1898042",
        "organism_name": "Pseudovibrio brasiliensis",
        "infraspecific_name": "strain=Ab134",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/10",
        "asm_name": "ASM194168v1",
        "asm_submitter": "Universidade Federal do Rio de Janeiro",
        "gbrs_paired_asm": "GCA_001941685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/941/685/GCF_001941685.1_ASM194168v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5975631",
        "genome_size_ungapped": "5975631",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "39",
        "contig_count": "39",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-29",
        "total_gene_count": "5404",
        "protein_coding_gene_count": "5297",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-10",
    "dateModified": "2017-01-10",
    "datePublished": "2017-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudovibrio brasiliensis"
        ],
        "sample_taxid": [
            "1898042"
        ],
        "sample_host_organism": [
            "Arenosclera brasiliensis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Joao Fernandinho Beach, Buzios"
        ],
        "sample_host_location_id": [],
        "data_size": "1.703 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5975631",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "503406",
        "N50 (bp)": "382132",
        "Gap Ratio (%)": "0.001406",
        "GCcontent (%)": "52.1",
        "Number of CDSs": "5358",
        "Average Protein Length": "317.8",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pseudovibrio brasiliensis",
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                "accession": "GCA_001941685.1",
                "taxid": 1898042,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudovibrio brasiliensis",
                "strain": "strain=Ab134",
                "accession": "GCA_018282095.1",
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                "species_taxid": 1898042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9909,
                "matched_fragments": 1968,
                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudovibrio denitrificans",
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                "accession": "GCA_900116575.1",
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                "species_taxid": 258256,
                "relation_to_type": "type",
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                "ani": 94.0013,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudovibrio denitrificans",
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                "accession": "GCA_001310815.1",
                "taxid": 258256,
                "species_taxid": 258256,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudovibrio ascidiaceicola",
                "strain": "strain=DSM 16392",
                "accession": "GCA_900114245.1",
                "taxid": 285279,
                "species_taxid": 285279,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2605,
                "matched_fragments": 1582,
                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudovibrio japonicus",
                "strain": "strain=KCTC 12861",
                "accession": "GCA_014651595.1",
                "taxid": 366534,
                "species_taxid": 366534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.643,
                "matched_fragments": 1150,
                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseibium limicola",
                "strain": "strain=CAU 1637",
                "accession": "GCA_017313085.1",
                "taxid": 2816037,
                "species_taxid": 2816037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1383,
                "matched_fragments": 97,
                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018282095.1",
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                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Pseudovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001310815.1",
                "gtdb_species": "s__Pseudovibrio denitrificans",
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                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Pseudovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.81",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_900114245.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Pseudovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.13",
                "min_intra_species_ani": "95.42",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900143565.1",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001623075.1",
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            },
            {
                "accession": "GCF_014651595.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001310715.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "gram_stain": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    },
    "_genome_taxon": [
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        "brasiliensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}