{
    "type": "genome",
    "identifier": "GCF_001941825.1",
    "organism": "Massilia putida",
    "title": "Massilia putida",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangnan UniversityGuangdong Institute of Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001941825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06191485",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1141883",
        "species_taxid": "1141883",
        "organism_name": "Massilia putida",
        "infraspecific_name": "strain=6NM-7",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/10",
        "asm_name": "ASM194182v1",
        "asm_submitter": "Jiangnan UniversityGuangdong Institute of Microbiology",
        "gbrs_paired_asm": "GCA_001941825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/941/825/GCF_001941825.1_ASM194182v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7523017",
        "genome_size_ungapped": "7523017",
        "gc_percent": "65.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001941825.1-RS_2024_08_18",
        "annotation_date": "2024-08-18",
        "total_gene_count": "6723",
        "protein_coding_gene_count": "6484",
        "non_coding_gene_count": "112",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-10",
    "dateModified": "2017-01-10",
    "datePublished": "2017-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Massilia putida"
        ],
        "sample_taxid": [
            "1141883"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Jiangxi"
        ],
        "sample_host_location_id": [],
        "data_size": "2.056 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7523017",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "6987670",
        "N50 (bp)": "6987670",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.5",
        "Number of CDSs": "6596",
        "Average Protein Length": "341.8",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "21",
        "Number of tRNAs": "96",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Massilia putida",
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                "accession": "GCA_001941825.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2507,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Massilia rhizosphaerae",
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                "taxid": 2784389,
                "species_taxid": 2784389,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1700,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia pinisoli",
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                "accession": "GCA_024753285.1",
                "taxid": 1772194,
                "species_taxid": 1772194,
                "relation_to_type": "type",
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                "ani": 89.3055,
                "matched_fragments": 1693,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia norwichensis",
                "strain": "strain=LMG 28164",
                "accession": "GCA_024753245.1",
                "taxid": 1442366,
                "species_taxid": 1442366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4302,
                "matched_fragments": 1368,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia forsythiae",
                "strain": "strain=GN2-R2",
                "accession": "GCA_012849555.1",
                "taxid": 2728020,
                "species_taxid": 2728020,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8742,
                "matched_fragments": 1398,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia agri",
                "strain": "strain=JCM 31661",
                "accession": "GCA_024753255.1",
                "taxid": 1886785,
                "species_taxid": 1886785,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7689,
                "matched_fragments": 1132,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia solisilvae",
                "strain": "strain=JCM 31607",
                "accession": "GCA_024753215.1",
                "taxid": 1811225,
                "species_taxid": 1811225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6551,
                "matched_fragments": 1068,
                "total_fragments": 2507,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_001941825.1",
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                "matched_fragments": 2507,
                "total_fragments": 2507,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001425685.1",
                "gtdb_species": "s__Massilia sp001425685",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016093545.1",
                "gtdb_species": "s__Massilia sp016093545",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101265.1",
                "gtdb_species": "s__Massilia sp900101265",
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                "matched_fragments": 1819,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001426525.1",
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            {
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            },
            {
                "accession": "GCF_002968015.1",
                "gtdb_species": "s__Massilia phosphatilytica",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "putida"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}