{ "type": "genome", "identifier": "GCF_001945665.1", "organism": "Borreliella mayonii", "title": "Borreliella mayonii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centers for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001945665.1", "bioproject": "PRJNA224116", "biosample": "SAMN04979181", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1674146", "species_taxid": "1674146", "organism_name": "Borreliella mayonii", "infraspecific_name": "strain=MN14-1420", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/11", "asm_name": "ASM194566v1", "asm_submitter": "Centers for Disease Control and Prevention", "gbrs_paired_asm": "GCA_001945665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/945/665/GCF_001945665.1_ASM194566v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1311545", "genome_size_ungapped": "1311545", "gc_percent": "28.000000", "replicon_count": "16", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001945665.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "1327", "protein_coding_gene_count": "1200", "non_coding_gene_count": "40", "pubmed_id": "28030649" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-11", "dateModified": "2017-01-11", "datePublished": "2017-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Borreliella mayonii" ], "sample_taxid": [ "1674146" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Lyme Borreliosis" ], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.343 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1311545", "Number of Sequences": "16", "Longest Sequences (bp)": "904387", "N50 (bp)": "904387", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.9", "Number of CDSs": "1304", "Average Protein Length": "287.5", "Coding Ratio (%)": "85.8", "Number of rRNAs": "5", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Borreliella mayonii", "strain": "strain=MN14-1420", "accession": "GCA_001945665.1", "taxid": 1674146, "species_taxid": 1674146, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 429, "total_fragments": 429, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Borreliella lanei", "strain": "strain=DSM 17992", "accession": "GCA_014205895.1", "taxid": 373540, "species_taxid": 373540, "relation_to_type": "type", "validated": true, "ani": 94.3829, "matched_fragments": 355, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Borreliella burgdorferi", "strain": "strain=FDAARGOS_196", "accession": "GCA_002083055.2", "taxid": 139, "species_taxid": 139, "relation_to_type": "type", "validated": true, "ani": 93.6943, "matched_fragments": 376, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Borreliella burgdorferi", "strain": "strain=B31", "accession": "GCA_000008685.2", "taxid": 139, "species_taxid": 139, "relation_to_type": "type", "validated": true, "ani": 93.6725, "matched_fragments": 391, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Borreliella burgdorferi", "strain": "strain=B31_NRZ", "accession": "GCA_002151505.1", "taxid": 139, "species_taxid": 139, "relation_to_type": "type", "validated": true, "ani": 93.5381, "matched_fragments": 374, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Borreliella bissettiae", "strain": "strain=DN127", "accession": "GCA_000222305.1", "taxid": 64897, "species_taxid": 64897, "relation_to_type": "type", "validated": true, "ani": 93.3725, "matched_fragments": 383, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Borreliella californiensis", "strain": "strain=DSM 17989", "accession": "GCA_014205885.1", "taxid": 373543, "species_taxid": 373543, "relation_to_type": "type", "validated": true, "ani": 93.1225, "matched_fragments": 364, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001945665.1", "gtdb_species": "s__Borreliella mayonii", "ani": 100.0, "matched_fragments": 429, "total_fragments": 429, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Borreliales;f__Borreliaceae;g__Borreliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014205895.1", "gtdb_species": "s__Borreliella lanei", "ani": 94.271, "matched_fragments": 357, "total_fragments": 429, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Borreliales;f__Borreliaceae;g__Borreliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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"s__Borreliella finlandensis", "ani": 93.2976, "matched_fragments": 365, "total_fragments": 429, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Borreliales;f__Borreliaceae;g__Borreliella", "ani_circumscription_radius": 96.6606, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205885.1", "gtdb_species": "s__Borreliella californiensis", "ani": 93.1839, "matched_fragments": 363, "total_fragments": 429, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Borreliales;f__Borreliaceae;g__Borreliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014202295.1", "gtdb_species": "s__Borreliella afzelii", "ani": 91.3332, "matched_fragments": 366, "total_fragments": 429, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Borreliales;f__Borreliaceae;g__Borreliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "99.08", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 10, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.699, "cell_length": 0.602, "doubling_h": 0.602, "growth_tmp": 33.166, "optimum_tmp": 32.817, "optimum_ph": null, "genome_size": 1097921.458, "gc_content": 26.989, "coding_genes": 1026.214, "rRNA16S_genes": 1.033, "tRNA_genes": 31.833, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.125, "aerobic_respiration": 0.875, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Borreliella", "mayonii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }