{ "type": "genome", "identifier": "GCF_001951015.1", "organism": "Rickettsia rickettsii", "title": "Rickettsia rickettsii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NIAID", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001951015.1", "bioproject": "PRJNA224116", "biosample": "SAMN06133287", "wgs_master": "na", "refseq_category": "na", "taxid": "783", "species_taxid": "783", "organism_name": "Rickettsia rickettsii", "infraspecific_name": "strain=Iowa", "isolate": "Small Clone", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/12", "asm_name": "ASM195101v1", "asm_submitter": "NIAID", "gbrs_paired_asm": "GCA_001951015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/951/015/GCF_001951015.1_ASM195101v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1268242", "genome_size_ungapped": "1268242", "gc_percent": "32.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001951015.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "1444", "protein_coding_gene_count": "1304", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-12", "dateModified": "2017-01-12", "datePublished": "2017-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rickettsia rickettsii" ], "sample_taxid": [ "783" ], "sample_host_organism": [ "Dermacentor variabilis" ], "sample_host_organism_id": [], "sample_host_disease": [ "not applicable" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Iowa" ], "sample_host_location_id": [], "data_size": "0.352 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1268242", "Number of Sequences": "1", "Longest Sequences (bp)": "1268242", "N50 (bp)": "1268242", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.4", "Number of CDSs": "1366", "Average Protein Length": "241.7", "Coding Ratio (%)": "78.1", "Number of rRNAs": "3", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rickettsia rickettsii", "strain": "strain=Iowa", "accession": "GCA_001951015.1", "taxid": 783, "species_taxid": 783, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 422, "total_fragments": 422, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rickettsia rickettsii", "strain": "strain=Iowa", "accession": "GCA_001950995.1", "taxid": 783, "species_taxid": 783, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9998, "matched_fragments": 422, "total_fragments": 422, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rickettsia rickettsii", "strain": "strain=Iowa", "accession": "GCA_000017445.3", "taxid": 783, "species_taxid": 783, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9992, "matched_fragments": 422, "total_fragments": 422, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rickettsia conorii", "strain": "strain=Malish 7", "accession": "GCA_000007025.1", "taxid": 781, "species_taxid": 781, "relation_to_type": "suspected-type", "validated": true, "ani": 98.2502, "matched_fragments": 410, "total_fragments": 422, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rickettsia sibirica", "strain": "strain=246", "accession": "GCA_000166935.1", "taxid": 35793, "species_taxid": 35793, "relation_to_type": "suspected-type", "validated": true, "ani": 98.1939, "matched_fragments": 412, "total_fragments": 422, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rickettsia sibirica subsp. mongolitimonae", "strain": "strain=HA-91", "accession": "GCA_000247625.2", "taxid": 45261, "species_taxid": 35793, "relation_to_type": "suspected-type", "validated": true, "ani": 98.1145, "matched_fragments": 400, "total_fragments": 422, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rickettsia conorii subsp. caspia", "strain": "strain=A-167", "accession": "GCA_000261325.1", "taxid": 302011, "species_taxid": 781, "relation_to_type": "suspected-type", "validated": true, "ani": 98.0639, "matched_fragments": 401, "total_fragments": 422, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rickettsia conorii subsp. israelensis", "strain": "strain=ISTT CDC1", 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