{
    "type": "genome",
    "identifier": "GCF_001952075.1",
    "organism": "Bartonella apis",
    "title": "Bartonella apis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Lausanne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001952075.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04505058",
        "wgs_master": "LXYU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1686310",
        "species_taxid": "1686310",
        "organism_name": "Bartonella apis",
        "infraspecific_name": "strain=PEB0122",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/13",
        "asm_name": "ASM195207v1",
        "asm_submitter": "University of Lausanne",
        "gbrs_paired_asm": "GCA_001952075.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/952/075/GCF_001952075.1_ASM195207v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2603122",
        "genome_size_ungapped": "2603122",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001952075.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "2226",
        "protein_coding_gene_count": "2150",
        "non_coding_gene_count": "57",
        "pubmed_id": "28234349"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-13",
    "dateModified": "2017-01-13",
    "datePublished": "2017-01-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bartonella apis"
        ],
        "sample_taxid": [
            "1686310"
        ],
        "sample_host_organism": [
            "Apis mellifera (Western honey bee)"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: West Haven, CT"
        ],
        "sample_host_location_id": [],
        "data_size": "0.737 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2603122",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "980731",
        "N50 (bp)": "566086",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.5",
        "Number of CDSs": "2163",
        "Average Protein Length": "324.2",
        "Coding Ratio (%)": "80.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bartonella apis",
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                "accession": "GCA_001952075.1",
                "taxid": 1686310,
                "species_taxid": 1686310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 858,
                "total_fragments": 859,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brucella anthropi",
                "strain": "strain=NCTC12168",
                "accession": "GCA_900454235.1",
                "taxid": 529,
                "species_taxid": 529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5815,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ochrobactrum] quorumnocens",
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                "accession": "GCA_002278035.1",
                "taxid": 271865,
                "species_taxid": 271865,
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                "validated": true,
                "ani": 77.5781,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum algeriensis",
                "strain": "",
                "accession": "GCA_018436245.1",
                "taxid": 2834768,
                "species_taxid": 2834768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3948,
                "matched_fragments": 60,
                "total_fragments": 859,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella anthropi",
                "strain": "strain=ATCC 49188",
                "accession": "GCA_000017405.1",
                "taxid": 529,
                "species_taxid": 529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3141,
                "matched_fragments": 60,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum algeriensis",
                "strain": "",
                "accession": "GCA_907164595.1",
                "taxid": 2834768,
                "species_taxid": 2834768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9595,
                "matched_fragments": 58,
                "total_fragments": 859,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella pituitosa",
                "strain": "strain=CCUG 50899",
                "accession": "GCA_008801705.1",
                "taxid": 571256,
                "species_taxid": 571256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.046,
                "matched_fragments": 51,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum asaccharolyticum",
                "strain": "strain=DSM 25619",
                "accession": "GCA_003314995.1",
                "taxid": 354351,
                "species_taxid": 354351,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8459,
                "matched_fragments": 67,
                "total_fragments": 859,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001952075.1",
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                "ani": 100.0,
                "matched_fragments": 859,
                "total_fragments": 859,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "95.90",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016102285.1",
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                "matched_fragments": 723,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002007485.1",
                "gtdb_species": "s__Bartonella apis_A",
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                "matched_fragments": 703,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 12,
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            },
            {
                "accession": "GCF_016100455.1",
                "gtdb_species": "s__Bartonella sp016100455",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_002007565.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
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            },
            {
                "accession": "GCF_002278035.1",
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                "matched_fragments": 52,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.687,
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    "_genome_taxon": [
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        "apis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}