{ "type": "genome", "identifier": "GCF_001953635.1", "organism": "Alteromonas abrolhosensis", "title": "Alteromonas abrolhosensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UFRJ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001953635.1", "bioproject": "PRJNA224116", "biosample": "SAMN05630991", "wgs_master": "MEJH00000000.1", "refseq_category": "reference genome", "taxid": "1892904", "species_taxid": "1892904", "organism_name": "Alteromonas abrolhosensis", "infraspecific_name": "strain=PEL67E", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/17", "asm_name": "ASM195363v1", "asm_submitter": "UFRJ", "gbrs_paired_asm": "GCA_001953635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/953/635/GCF_001953635.1_ASM195363v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4433598", "genome_size_ungapped": "4433598", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001953635.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3846", "protein_coding_gene_count": "3732", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-17", "dateModified": "2017-01-17", "datePublished": "2017-01-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas abrolhosensis" ], "sample_taxid": [ "1892904" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Abrolhos bank reef" ], 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"status": "conclusive" }, { "organism_name": "Alteromonas macleodii", "strain": "strain=ATCC 27126", "accession": "GCA_000172635.2", "taxid": 28108, "species_taxid": 28108, "relation_to_type": "type", "validated": true, "ani": 90.1813, "matched_fragments": 1240, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas portus", "strain": "strain=HB161718", "accession": "GCA_005117025.1", "taxid": 2565549, "species_taxid": 2565549, "relation_to_type": "type", "validated": true, "ani": 86.5979, "matched_fragments": 1069, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas gracilis", "strain": "strain=9a2", "accession": "GCA_002993325.1", "taxid": 1479524, "species_taxid": 1479524, "relation_to_type": "type", "validated": true, "ani": 83.6294, "matched_fragments": 943, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas 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"GCA_017638545.1", "taxid": 2820710, "species_taxid": 2820710, "relation_to_type": "type", "validated": true, "ani": 77.8097, "matched_fragments": 59, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium sanguinicancri", "strain": "strain=CECT 7579", "accession": "GCA_024346675.1", "taxid": 875932, "species_taxid": 875932, "relation_to_type": "type", "validated": true, "ani": 76.9246, "matched_fragments": 55, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marinintestina", "strain": "strain=LMG 21403", "accession": "GCA_023283845.1", "taxid": 190305, "species_taxid": 190305, "relation_to_type": "type", "validated": true, "ani": 76.261, "matched_fragments": 58, "total_fragments": 1464, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001953635.1", "gtdb_species": "s__Alteromonas abrolhosensis", "ani": 100.0, "matched_fragments": 1463, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.25", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_000172635.2", "gtdb_species": "s__Alteromonas macleodii", "ani": 90.1813, "matched_fragments": 1240, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "96.10", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.76", "num_clustered_genomes": 56, "status": "-" }, { "accession": 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sp003443615", "ani": 84.3096, "matched_fragments": 1047, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000020585.3", "gtdb_species": "s__Alteromonas mediterranea", "ani": 83.4058, "matched_fragments": 933, "total_fragments": 1464, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 24, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.182, "cell_length": 0.24, "doubling_h": null, "growth_tmp": 25.7, "optimum_tmp": 27.222, "optimum_ph": 7.5, "genome_size": 4625601.903, "gc_content": 44.122, "coding_genes": 3905.644, "rRNA16S_genes": 5.0, "tRNA_genes": 61.76, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Alteromonas", "abrolhosensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }