{
    "type": "genome",
    "identifier": "GCF_001953955.1",
    "organism": "Prevotella intermedia ATCC 25611 = DSM 20706",
    "title": "Prevotella intermedia ATCC 25611 = DSM 20706",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Forsyth Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001953955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04529094",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1122984",
        "species_taxid": "28131",
        "organism_name": "Prevotella intermedia ATCC 25611 = DSM 20706",
        "infraspecific_name": "strain=ATCC 25611",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/18",
        "asm_name": "ASM195395v1",
        "asm_submitter": "The Forsyth Institute",
        "gbrs_paired_asm": "GCA_001953955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/953/955/GCF_001953955.1_ASM195395v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2674170",
        "genome_size_ungapped": "2674170",
        "gc_percent": "43.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001953955.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "2236",
        "protein_coding_gene_count": "2108",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-18",
    "dateModified": "2017-01-18",
    "datePublished": "2017-01-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotella intermedia ATCC 25611 = DSM 20706"
        ],
        "sample_taxid": [
            "1122984"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Empyema"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.755 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2674170",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "1965935",
        "N50 (bp)": "1965935",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.4",
        "Number of CDSs": "2123",
        "Average Protein Length": "346.1",
        "Coding Ratio (%)": "82.4",
        "Number of rRNAs": "13",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Prevotella intermedia",
                "strain": "strain=ATCC 25611",
                "accession": "GCA_001953955.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 886,
                "total_fragments": 891,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella intermedia",
                "strain": "strain=NCTC13070",
                "accession": "GCA_900455005.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9983,
                "matched_fragments": 867,
                "total_fragments": 891,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella intermedia",
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                "accession": "GCA_000439065.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9872,
                "matched_fragments": 840,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella intermedia",
                "strain": "strain=ATCC 25611",
                "accession": "GCA_000519165.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9737,
                "matched_fragments": 844,
                "total_fragments": 891,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella falsenii",
                "strain": "strain=JCM 15124",
                "accession": "GCA_000613945.1",
                "taxid": 515414,
                "species_taxid": 515414,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2645,
                "matched_fragments": 698,
                "total_fragments": 891,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella nigrescens",
                "strain": "strain=FDAARGOS_1486",
                "accession": "GCA_019930605.1",
                "taxid": 28133,
                "species_taxid": 28133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.676,
                "matched_fragments": 590,
                "total_fragments": 891,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella illustrans",
                "strain": "strain=A2931",
                "accession": "GCA_017426725.1",
                "taxid": 2800387,
                "species_taxid": 2800387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6286,
                "matched_fragments": 72,
                "total_fragments": 891,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella vespertina",
                "strain": "strain=A2879",
                "accession": "GCA_009728485.1",
                "taxid": 2608404,
                "species_taxid": 2608404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4775,
                "matched_fragments": 119,
                "total_fragments": 891,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella copri",
                "strain": "strain=DSM 18205",
                "accession": "GCA_025151535.1",
                "taxid": 165179,
                "species_taxid": 165179,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2845,
                "matched_fragments": 73,
                "total_fragments": 891,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001953955.1",
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                "ani": 100.0,
                "matched_fragments": 884,
                "total_fragments": 891,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 34,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000613945.1",
                "gtdb_species": "s__Prevotella falsenii",
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                "total_fragments": 891,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000220235.1",
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                "matched_fragments": 579,
                "total_fragments": 891,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_000614025.1",
                "gtdb_species": "s__Prevotella aurantiaca",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000220255.1",
                "gtdb_species": "s__Prevotella pallens",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "96.89",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 40,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000614065.1",
                "gtdb_species": "s__Prevotella dentasini",
                "ani": 77.9521,
                "matched_fragments": 144,
                "total_fragments": 891,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.176,
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        "coding_genes": 2333.375,
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        "range_salinity": null,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Prevotella",
        "intermedia",
        "ATCC",
        "25611",
        "=",
        "DSM",
        "20706"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}