{ "type": "genome", "identifier": "GCF_001968835.1", "organism": "Tersicoccus phoenicis", "title": "Tersicoccus phoenicis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001968835.1", "bioproject": "PRJNA224116", "biosample": "SAMN05893361", "wgs_master": "MRDE00000000.1", "refseq_category": "reference genome", "taxid": "554083", "species_taxid": "554083", "organism_name": "Tersicoccus phoenicis", "infraspecific_name": "strain=1p05MA", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/23", "asm_name": "ASM196883v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_001968835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/968/835/GCF_001968835.1_ASM196883v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3209563", "genome_size_ungapped": "3209563", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "132", "contig_count": "132", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001968835.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3109", "protein_coding_gene_count": "2959", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-23", "dateModified": "2017-01-23", "datePublished": "2017-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Tersicoccus phoenicis" ], "sample_taxid": [ "554083" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], 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77.9898, "matched_fragments": 327, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas notoginsengisoli", "strain": "strain=KCTC 29237", "accession": "GCA_021554725.1", "taxid": 1457311, "species_taxid": 1457311, "relation_to_type": "type", "validated": true, "ani": 77.863, "matched_fragments": 258, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.7699, "matched_fragments": 286, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium flavum", "strain": "strain=CPCC 203535", "accession": "GCA_004526345.1", "taxid": 1288636, "species_taxid": 1288636, "relation_to_type": "type", "validated": true, "ani": 77.1956, "matched_fragments": 214, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella gossypii", "strain": "strain=N2-46", "accession": "GCA_019947135.1", "taxid": 2800820, "species_taxid": 2800820, "relation_to_type": "type", "validated": true, "ani": 77.004, "matched_fragments": 267, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 2518684, "relation_to_type": "type", "validated": true, "ani": 76.8727, "matched_fragments": 273, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gilvus", "strain": "strain=ATCC 13127", "accession": "GCA_000218545.1", "taxid": 11, "species_taxid": 11, "relation_to_type": "type", "validated": true, "ani": 76.7966, "matched_fragments": 226, "total_fragments": 1024, "ani_threshold": 95, "status": 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