# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_64	LOCUS_00640	sequence02:1160..1921(-)	partial			WP_010922203.1	phage antirepressor KilAC domain-containing protein	68.4	70.2	74.6
MGA_77	LOCUS_00770	sequence02:14953..15099(-)	internal_stop_codon	15103..15105(-)		WP_000048144.1	(S)-acetoin forming diacetyl reductase	100.0	18.9	97.9
MGA_78	LOCUS_00780	sequence02:15103..15717(-)	internal_stop_codon	15103..15105(-)		WP_000048144.1	(S)-acetoin forming diacetyl reductase	100.0	80.3	99.0
MGA_135	LOCUS_01350	sequence02:78896..79216(+)	frameshift		79183	WP_165992825.1	IS3 family transposase	85.8	23.9	87.9
MGA_136	LOCUS_01360	sequence02:79336..79977(+)	frameshift,internal_stop_codon	80058..80060(+)	79954,79174	WP_088197835.1	IS3-like element ISSag5 family transposase	96.7	54.1	95.1
MGA_139	LOCUS_01390	sequence02:81662..82378(-)	partial			WP_000926333.1	LD-carboxypeptidase	98.7	71.5	44.8
MGA_142	LOCUS_01420	sequence02:84715..85053(-)	partial			WP_008088279.1	Fic family protein	91.1	31.1	99.0
MGA_143	LOCUS_01430	sequence02:85470..85784(-)	partial			WP_006738705.1	phage tail spike protein	73.1	7.6	86.8
MGA_144	LOCUS_01440	sequence02:85850..86302(-)	partial			WP_000523689.1	phage portal protein	90.7	31.2	87.1
MGA_149	LOCUS_01490	sequence02:87786..88445(+)	partial			WP_014635352.1	hypothetical protein	100.0	74.5	95.0
MGA_151	LOCUS_01510	sequence02:88660..89388(+)	internal_stop_codon	89386..89388(+)		WP_012560534.1	DUF2326 domain-containing protein	100.0	43.8	97.5
MGA_152	LOCUS_01520	sequence02:89473..90318(+)	internal_stop_codon	89386..89388(+)		WP_012560534.1	DUF2326 domain-containing protein	100.0	50.9	95.7
MGA_173	LOCUS_01730	sequence02:113659..114834(-)	partial			WP_010921986.1	ABC-2 family transporter protein	51.7	73.9	98.0
MGA_189	LOCUS_01890	sequence02:131487..131723(-)	partial			WP_002985700.1	preprotein translocase subunit SecG	74.4	74.4	87.9
MGA_202	LOCUS_02020	sequence02:142276..142698(+)	frameshift		142823	WP_000191691.1	IS256-like element ISSag11 family transposase	91.4	32.7	86.7
MGA_203	LOCUS_02030	sequence02:142828..142962(+)	frameshift		142823	WP_000191691.1	IS256-like element ISSag11 family transposase	100.0	11.3	72.7
MGA_294	LOCUS_02940	sequence03:2168..2395(+)	frameshift,internal_stop_codon	2126..2128(+)	2386,1941	WP_002352368.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	77.3	20.6	65.5
MGA_332	LOCUS_03320	sequence03:39831..40514(+)	frameshift		39768	WP_008090262.1	class C sortase	99.6	79.9	81.4
MGA_335	LOCUS_03350	sequence03:43196..43591(-)	frameshift		43701	WP_004454990.1	LysR family transcriptional regulator	80.9	35.3	34.9
MGA_336	LOCUS_03360	sequence03:43687..44106(-)	frameshift		43701	WP_004454990.1	LysR family transcriptional regulator	97.8	45.3	51.5
MGA_358	LOCUS_03580	sequence03:66355..66711(+)	internal_stop_codon	66295..66297(+)		WP_003058235.1	NAD glycohydrolase inhibitor	100.0	73.3	96.6
MGA_359	LOCUS_03590	sequence03:66726..67082(+)	frameshift		67028	WP_010921831.1	cholesterol-dependent cytolysin streptolysin O	87.3	18.0	83.5
MGA_360	LOCUS_03600	sequence03:67358..68449(+)	partial			WP_010921831.1	cholesterol-dependent cytolysin streptolysin O	100.0	63.6	98.9
MGA_456	LOCUS_04550	sequence06:8215..8496(+)	frameshift,internal_stop_codon	8102..8104(+),8495..8497(+)	8161,8629	WP_000402394.1	helix-turn-helix transcriptional regulator	100.0	47.2	45.2
MGA_458	LOCUS_04570	sequence06:9571..10323(-)	partial			WP_003032336.1	type IV secretion system DNA-binding domain-containing protein	100.0	68.3	90.0
MGA_459	LOCUS_04580	sequence06:10389..11312(-)	partial			WP_003077408.1	helix-turn-helix transcriptional regulator	99.0	64.5	86.8
MGA_492	LOCUS_04910	sequence06:42693..42932(+)	internal_stop_codon	42654..42656(+)		WP_007056318.1	helix-turn-helix domain-containing protein	91.1	60.5	68.1
MGA_540	LOCUS_05390	sequence06:99866..100171(+)	partial			WP_010922720.1	cysteine proteinase exotoxin SpeB	95.0	25.4	38.2
MGA_544	LOCUS_05430	sequence06:102779..103063(+)	partial			WP_002993558.1	hypothetical protein	100.0	70.1	95.7
MGA_573	LOCUS_05710	sequence07:19392..19982(-)	frameshift,internal_stop_codon	20046..20048(-)	19408,20132,20021	WP_164925488.1	IS110 family transposase	99.0	45.1	79.4
MGA_574	LOCUS_05720	sequence07:20031..20282(-)	frameshift,internal_stop_codon	20045..20047(-)	20299,20020,20131	WP_162038636.1	IS110 family transposase	61.4	11.6	82.4
MGA_576	LOCUS_05740	sequence07:21297..22184(-)	frameshift		21323	WP_010921809.1	transcriptional regulator RofA	96.9	57.3	32.3
MGA_612	LOCUS_06100	sequence07:70183..70359(+)	partial			WP_000048058.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_678	LOCUS_06760	sequence07:140621..140839(-)	frameshift,internal_stop_codon	140915..140917(-),140912..140914(-)	140939	WP_128834060.1	IS3-like element ISSmu1 family transposase	100.0	16.0	81.9
MGA_679	LOCUS_06770	sequence07:141136..141345(-)	frameshift		141422	WP_010921949.1	streptococcal pyrogenic exotoxin SpeJ	100.0	29.7	71.0
MGA_788	LOCUS_07860	sequence07:256569..257315(+)	partial			WP_025188680.1	DnaD domain protein	44.0	43.4	56.9
MGA_790	LOCUS_07880	sequence07:258137..258367(+)	partial			WP_000220553.1	hypothetical protein	94.7	56.7	38.2
MGA_793	LOCUS_07910	sequence07:259017..259322(+)	partial			WP_000793494.1	DUF1372 family protein	62.4	57.8	77.8
MGA_810	LOCUS_08080	sequence07:267580..268386(+)	partial			WP_013096330.1	Clp protease ClpP	67.2	28.7	32.8
MGA_835	LOCUS_08330	sequence07:287679..287876(+)	frameshift,internal_stop_codon	287935..287937(+)	287840,287915	WP_000438314.1	nucleoside-diphosphate kinase	75.4	34.8	55.1
MGA_847	LOCUS_08450	sequence07:299381..299728(+)	frameshift,internal_stop_codon	299726..299728(+)	299812	WP_003058426.1	YkgJ family cysteine cluster protein	100.0	68.5	93.0
MGA_857	LOCUS_08550	sequence07:310282..310650(+)	frameshift,internal_stop_codon	310651..310653(+)	310080,310134,310263	WP_105158881.1	replication initiator protein A	100.0	44.1	66.4
MGA_858	LOCUS_08560	sequence07:310825..311148(+)	partial			WP_074485044.1	DNA (cytosine-5-)-methyltransferase	70.1	16.6	94.7
MGA_859	LOCUS_08570	sequence07:311464..311673(+)	frameshift,internal_stop_codon	311326..311328(+),311416..311418(+)	311664,311754,311826	WP_168549381.1	SAG1250 family conjugative relaxase	98.6	11.0	91.2
MGA_860	LOCUS_08580	sequence07:311938..312633(+)	frameshift,internal_stop_codon	311803..311805(+)	311667,311820	WP_093958851.1	SAG1250 family conjugative relaxase	99.6	36.2	68.3
MGA_869	LOCUS_08670	sequence07:318981..319112(+)	internal_stop_codon	319110..319112(+),319353..319355(+)		WP_000201988.1	site-specific integrase	100.0	10.8	81.4
MGA_870	LOCUS_08680	sequence07:319134..319355(+)	internal_stop_codon	319110..319112(+),319353..319355(+),319647..319649(+)		WP_012775621.1	site-specific integrase	98.6	18.0	77.8
MGA_871	LOCUS_08690	sequence07:319428..319649(+)	internal_stop_codon	319353..319355(+),319647..319649(+)		WP_000201988.1	site-specific integrase	100.0	18.3	87.7
MGA_872	LOCUS_08700	sequence07:319680..320063(+)	internal_stop_codon	319647..319649(+),320061..320063(+)		WP_000201988.1	site-specific integrase	100.0	31.8	86.6
MGA_905	LOCUS_09030	sequence07:351301..351918(+)	frameshift		351852	WP_009854121.1	SDR family oxidoreductase	94.1	78.5	74.1
MGA_938	LOCUS_09360	sequence07:385187..385669(-)	frameshift,internal_stop_codon	385910..385912(-),385675..385677(-)	385800,385946,385879	WP_000354840.1	LysR family transcriptional regulator	100.0	54.4	77.5
MGA_939	LOCUS_09370	sequence07:386082..386627(+)	partial			WP_001286427.1	PTS sugar transporter subunit IIC	100.0	53.4	84.6
MGA_1045	LOCUS_10430	sequence07:494602..495204(-)	partial			WP_000227060.1	hypothetical protein	53.5	67.7	44.4
MGA_1046	LOCUS_10440	sequence07:495216..495980(-)	partial			WP_010922095.1	glucosaminidase domain-containing protein	96.9	58.8	45.7
MGA_1051	LOCUS_10490	sequence07:497145..499007(-)	partial			WP_000536253.1	DUF859 family phage minor structural protein	76.6	71.1	35.3
MGA_1052	LOCUS_10500	sequence07:499012..502452(-)	partial			WP_000955548.1	glucosaminidase domain-containing protein	82.5	72.2	43.4
MGA_1054	LOCUS_10520	sequence07:503938..505743(-)	partial			WP_000224695.1	hypothetical protein	66.9	57.2	37.3
MGA_1093	LOCUS_10910	sequence08:31314..31538(+)	frameshift		31339	WP_000448266.1	pyruvate, phosphate dikinase	94.6	7.9	64.3
MGA_1142	LOCUS_11400	sequence08:76196..76357(+)	frameshift		76345	WP_010922579.1	CopY/TcrY family copper transport repressor	100.0	36.8	98.1
MGA_1152	LOCUS_11500	sequence08:83896..84159(+)	frameshift		83893,84133	WP_002468897.1	tagatose-6-phosphate kinase	88.5	24.8	53.2
MGA_1167	LOCUS_11650	sequence08:99158..100123(+)	frameshift		100090	WP_002983556.1	glycerol kinase GlpK	96.9	61.2	100.0
MGA_1168	LOCUS_11660	sequence08:100125..100685(+)	frameshift		100087	WP_002983556.1	glycerol kinase GlpK	100.0	36.6	97.3
MGA_1209	LOCUS_12070	sequence08:145683..146000(+)	partial			WP_002983650.1	DNA-directed RNA polymerase subunit omega	68.6	68.6	100.0
MGA_1252	LOCUS_12500	sequence09:33057..33569(+)	frameshift,internal_stop_codon	32866..32868(+)	32856	WP_164227857.1	nucleoside phosphorylase	100.0	64.4	86.5
MGA_1298	LOCUS_12950	sequence10:44313..44627(+)	frameshift		44271	WP_002992262.1	helix-turn-helix transcriptional regulator	100.0	83.9	100.0
MGA_1406	LOCUS_14030	sequence12:71177..73036(-)	frameshift		73110	WP_010922513.1	CRISPR-associated helicase/endonuclease Cas3	100.0	77.2	99.2
MGA_1407	LOCUS_14040	sequence12:73078..73584(-)	frameshift		73107	WP_010922513.1	CRISPR-associated helicase/endonuclease Cas3	94.6	19.8	100.0
MGA_1410	LOCUS_14070	sequence12:76948..77127(-)	partial			WP_003055970.1	GNAT family protein	100.0	30.1	91.5
MGA_1452	LOCUS_14480	sequence13:20235..20516(+)	frameshift		20513	WP_004270929.1	IS30 family transposase	79.6	21.3	40.5
MGA_1453	LOCUS_14490	sequence13:21682..22734(-)	partial			WP_010922804.1	YfhO family protein	100.0	40.8	97.7
MGA_1483	LOCUS_14780	sequence14:400..1161(-)	partial			WP_001181101.1	replication initiator protein A	45.8	35.5	38.5
MGA_1497	LOCUS_14920	sequence15:1581..2786(-)	frameshift		1449	WP_184006649.1	IS1182 family transposase	94.3	78.8	96.8
MGA_1499	LOCUS_14940	sequence15:6811..8094(+)	partial			WP_010922710.1	LPXTG-anchored fibronectin-binding protein FbpA	41.7	47.0	88.8
MGA_1545	LOCUS_15400	sequence15:61038..62273(+)	frameshift		62165	WP_009880550.1	PTS ascorbate transporter subunit IIC	91.5	81.9	96.5
MGA_1546	LOCUS_15410	sequence15:62201..62416(+)	frameshift		62165	WP_009880550.1	PTS ascorbate transporter subunit IIC	100.0	15.5	93.0
MGA_1558	LOCUS_15530	sequence15:72792..73298(+)	partial			WP_038431592.1	hypothetical protein	92.9	66.8	92.9
MGA_1562	LOCUS_15570	sequence15:74698..74847(-)	partial			WP_000022160.1	site-specific integrase	95.9	12.2	85.1
MGA_1575	LOCUS_15700	sequence15:87309..87671(+)	partial			WP_000151458.1	ATP-binding cassette domain-containing protein	89.2	50.2	46.7
MGA_1578	LOCUS_15730	sequence15:91305..91916(+)	partial			WP_000761138.1	ATP-binding protein	98.5	38.9	31.9
MGA_1601	LOCUS_15940	sequence17:761..4684(-)	partial			WP_011475661.1	tape measure protein	67.9	72.7	22.3
MGA_1609	LOCUS_16020	sequence17:7485..8669(-)	partial			WP_010905714.1	phage major capsid protein	78.7	72.5	42.0
MGA_1610	LOCUS_16030	sequence17:8693..9358(-)	partial			WP_011475651.1	Clp protease ClpP	76.9	72.0	43.4
MGA_1623	LOCUS_16160	sequence18:715..1647(+)	internal_stop_codon	1645..1647(+)		WP_010922072.1	DNA modification methylase	100.0	79.9	95.2
MGA_1624	LOCUS_16170	sequence18:1666..1881(+)	internal_stop_codon	1645..1647(+)		WP_010922072.1	DNA modification methylase	100.0	18.3	100.0
MGA_1656	LOCUS_16490	sequence19:15794..15937(+)	partial			WP_002894209.1	teichoic acid D-Ala incorporation-associated protein DltX	72.3	79.1	58.8
MGA_1684	LOCUS_16770	sequence19:46253..46453(+)	partial			WP_012258019.1	cupin domain-containing protein	92.4	28.4	47.5
MGA_1691	LOCUS_16840	sequence19:48210..48524(+)	partial			WP_001080846.1	helix-turn-helix transcriptional regulator	92.3	67.4	49.0
MGA_1706	LOCUS_16980	sequence20:14425..14967(-)	frameshift		14974	WP_002991036.1	two-component system sensor histidine kinase CovS	100.0	36.0	100.0
MGA_1707	LOCUS_16990	sequence20:14972..15928(-)	frameshift		14974	WP_002991036.1	two-component system sensor histidine kinase CovS	100.0	63.6	99.1
MGA_1760	LOCUS_17520	sequence21:33919..34110(-)	partial			WP_000934666.1	penicillin-binding protein PBP2B	85.7	7.6	53.7
MGA_1811	LOCUS_17990	sequence24:2810..>3638(-)	partial			WP_010922092.1	gp58-like family protein	98.9	43.3	90.1
MGA_1814	LOCUS_18020	sequence26:2747..3553(-)	frameshift		3639	WP_172450158.1	IS3 family transposase	100.0	60.0	96.6
MGA_1815	LOCUS_18030	sequence26:3574..4089(-)	frameshift		3645	WP_172450158.1	IS3 family transposase	94.2	36.0	93.2
MGA_1817	LOCUS_18040	sequence27:69..410(-)	frameshift		441	WP_000564846.1	ISAs1-like element IS1548 family transposase	100.0	30.0	100.0
MGA_1818	LOCUS_18050	sequence27:427..639(-)	frameshift		441,685	WP_010922515.1	ISAs1-like element IS1548 family transposase	82.9	15.4	100.0
MGA_1819	LOCUS_18060	sequence27:671..1126(-)	frameshift		724,462	WP_000564846.1	ISAs1-like element IS1548 family transposase	88.1	35.3	100.0
MGA_1821	LOCUS_18070	sequence28:949..>1654(-)	partial			WP_010922224.1	phage tail spike protein	97.9	33.6	90.4
MGA_1823	LOCUS_18080	sequence29:958..>1663(-)	partial			WP_010922090.1	phage tail spike protein	100.0	32.8	94.0
MGA_1832	LOCUS_18140	sequence33:488..784(-)	frameshift,internal_stop_codon	328..330(-),214..216(-),487..489(-)	858	WP_100190746.1	IS3 family transposase	95.9	24.6	61.7