{ "type": "genome", "identifier": "GCF_001984715.1", "organism": "Streptococcus azizii", "title": "Streptococcus azizii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centers for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001984715.1", "bioproject": "PRJNA224116", "biosample": "SAMN06174760", "wgs_master": "MSPR00000000.1", "refseq_category": "reference genome", "taxid": "1579424", "species_taxid": "1579424", "organism_name": "Streptococcus azizii", "infraspecific_name": "strain=12-5202", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/02/04", "asm_name": "ASM198471v1", "asm_submitter": "Centers for Disease Control and Prevention", "gbrs_paired_asm": "GCA_001984715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/984/715/GCF_001984715.1_ASM198471v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2340839", "genome_size_ungapped": "2340839", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001984715.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "2069", "protein_coding_gene_count": "1965", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-02-04", "dateModified": "2017-02-04", "datePublished": "2017-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus azizii" ], "sample_taxid": [ "1579424" ], "sample_host_organism": [ "Mus musculus" ], "sample_host_organism_id": [], "sample_host_disease": [ "Multifocal necrosuppurative meningoencephalitis and ventriculitis" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: New York City" ], "sample_host_location_id": [], "data_size": "0.659 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2340839", "Number of Sequences": "47", "Longest Sequences (bp)": "286450", "N50 (bp)": "108610", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.8", "Number of CDSs": "1986", "Average Protein Length": "315.6", "Coding Ratio (%)": "80.3", "Number of rRNAs": "4", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus azizii", "strain": "strain=12-5202", "accession": "GCA_001984715.1", "taxid": 1579424, "species_taxid": 1579424, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 754, "total_fragments": 756, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus acidominimus", "strain": "strain=NCTC12957", "accession": "GCA_900459045.1", "taxid": 1326, "species_taxid": 1326, "relation_to_type": "type", "validated": true, "ani": 81.7825, "matched_fragments": 441, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus acidominimus", "strain": "strain=CCUG 27296", "accession": "GCA_001921825.1", "taxid": 1326, "species_taxid": 1326, "relation_to_type": "type", "validated": true, "ani": 81.6241, "matched_fragments": 429, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cuniculi", "strain": "strain=CCUG 65085", "accession": "GCA_001921845.1", "taxid": 1432788, "species_taxid": 1432788, "relation_to_type": "type", "validated": true, "ani": 81.5154, "matched_fragments": 406, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus respiraculi", "strain": "strain=HTS25", "accession": "GCA_003595525.1", "taxid": 2021971, "species_taxid": 2021971, "relation_to_type": "type", "validated": true, "ani": 81.2451, "matched_fragments": 391, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus hyovaginalis", "strain": "strain=DSM 12219", "accession": "GCA_000420785.1", "taxid": 149015, "species_taxid": 149015, "relation_to_type": "type", "validated": true, "ani": 80.8067, "matched_fragments": 83, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 79.5619, "matched_fragments": 83, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus loxodontisalivarius", "strain": "strain=DSM 27382", "accession": "GCA_016908645.1", "taxid": 1349415, "species_taxid": 1349415, "relation_to_type": "type", "validated": true, "ani": 78.8718, "matched_fragments": 69, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7468, "matched_fragments": 134, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 78.6791, "matched_fragments": 131, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus saliviloxodontae", "strain": "strain=DSM 27513", "accession": "GCA_016908655.1", "taxid": 1349416, "species_taxid": 1349416, "relation_to_type": "type", "validated": true, "ani": 78.4517, "matched_fragments": 76, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus danieliae", "strain": "strain=DSM 22233", "accession": "GCA_025447695.1", "taxid": 747656, "species_taxid": 747656, "relation_to_type": "type", "validated": true, "ani": 78.444, "matched_fragments": 56, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ovis", "strain": "strain=DSM 16829", "accession": "GCA_000380125.1", "taxid": 82806, "species_taxid": 82806, "relation_to_type": "type", "validated": true, "ani": 78.4286, "matched_fragments": 116, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 78.4277, "matched_fragments": 71, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halitosis", "strain": "strain=VT-4", "accession": "GCA_003143695.2", "taxid": 2172545, "species_taxid": 2172545, "relation_to_type": "type", "validated": true, "ani": 78.2611, "matched_fragments": 83, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 77.9026, "matched_fragments": 82, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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756, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.88", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001431045.1", "gtdb_species": "s__Streptococcus orisasini", "ani": 78.1631, "matched_fragments": 59, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011038795.1", "gtdb_species": "s__Streptococcus sp011038795", "ani": 77.7556, "matched_fragments": 53, "total_fragments": 756, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "azizii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }