{ "type": "genome", "identifier": "GCF_001989995.2", "organism": "Vibrio anguillarum", "title": "Vibrio anguillarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Copenhagen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001989995.2", "bioproject": "PRJNA224116", "biosample": "SAMN03177464", "wgs_master": "JAHGUP000000000.1", "refseq_category": "na", "taxid": "55601", "species_taxid": "55601", "organism_name": "Vibrio anguillarum", "infraspecific_name": "strain=DSM 21597", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/01", "asm_name": "ASM198999v2", "asm_submitter": "University of Copenhagen", "gbrs_paired_asm": "GCA_001989995.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/989/995/GCF_001989995.2_ASM198999v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4129890", "genome_size_ungapped": "4129890", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "257", "contig_count": "257", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2022-12-13", "total_gene_count": "3736", "protein_coding_gene_count": "3587", "non_coding_gene_count": "68", "pubmed_id": "28160295" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-01", "dateModified": "2021-06-01", "datePublished": "2021-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio anguillarum" ], "sample_taxid": [ "55601" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway" ], "sample_host_location_id": [], "data_size": "1.189 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4129890", "Number of Sequences": "257", "Longest Sequences (bp)": "209110", "N50 (bp)": "72773", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.4", "Number of CDSs": "3581", "Average Protein Length": "331.2", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio anguillarum", "strain": "strain=DSM 21597", "accession": "GCA_001989995.2", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1281, "total_fragments": 1282, "ani_threshold": 95, 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aestuarianus subsp. francensis", "strain": "strain=02/041", "accession": "GCA_012395215.1", "taxid": 1443279, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 81.976, "matched_fragments": 703, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus", "strain": "strain=LMG 7909", "accession": "GCA_012395185.1", "taxid": 28171, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 81.7389, "matched_fragments": 709, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=PartQ-Vfurnissii-RM8376", "accession": "GCA_022869905.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 79.1262, "matched_fragments": 420, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cholerae", "strain": "strain=ATCC 14035", 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313, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cidicii", "strain": "strain=2756-81", "accession": "GCA_009763805.1", "taxid": 1763883, "species_taxid": 1763883, "relation_to_type": "type", "validated": true, "ani": 78.6469, "matched_fragments": 340, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cyclitrophicus", "strain": "strain=LMG 21359", "accession": "GCA_024347435.1", "taxid": 47951, "species_taxid": 47951, "relation_to_type": "type", "validated": true, "ani": 78.5947, "matched_fragments": 291, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 78.5721, "matched_fragments": 333, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001989995.2", "gtdb_species": "s__Vibrio anguillarum", "ani": 100.0, "matched_fragments": 1281, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 96.3484, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 121, "status": "conclusive" }, { "accession": "GCA_000257205.1", "gtdb_species": "s__Vibrio ordalii", "ani": 96.1445, "matched_fragments": 928, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 96.3484, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", 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