{
    "type": "genome",
    "identifier": "GCF_001995845.1",
    "organism": "Salinivibrio kushneri",
    "title": "Salinivibrio kushneri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidad de Sevilla",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001995845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06266618",
        "wgs_master": "MUEK00000000.1",
        "refseq_category": "na",
        "taxid": "1908198",
        "species_taxid": "1908198",
        "organism_name": "Salinivibrio kushneri",
        "infraspecific_name": "strain=AL184",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/02/14",
        "asm_name": "ASM199584v1",
        "asm_submitter": "Universidad de Sevilla",
        "gbrs_paired_asm": "GCA_001995845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/995/845/GCF_001995845.1_ASM199584v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3447376",
        "genome_size_ungapped": "3447376",
        "gc_percent": "50.500000",
        "replicon_count": "0",
        "scaffold_count": "161",
        "contig_count": "161",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-26",
        "total_gene_count": "3263",
        "protein_coding_gene_count": "3099",
        "non_coding_gene_count": "122",
        "pubmed_id": "28684561"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-02-14",
    "dateModified": "2017-02-14",
    "datePublished": "2017-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Salinivibrio kushneri"
        ],
        "sample_taxid": [
            "1908198"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "0.989 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3447376",
        "Number of Sequences": "161",
        "Longest Sequences (bp)": "464443",
        "N50 (bp)": "198024",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.5",
        "Number of CDSs": "3062",
        "Average Protein Length": "323.2",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "86",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Salinivibrio kushneri",
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                "accession": "GCA_001995845.1",
                "taxid": 1908198,
                "species_taxid": 1908198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1108,
                "total_fragments": 1111,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salinivibrio kushneri",
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                "accession": "GCA_005280275.1",
                "taxid": 1908198,
                "species_taxid": 1908198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9973,
                "matched_fragments": 1103,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salinivibrio siamensis",
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                "accession": "GCA_001996005.1",
                "taxid": 414286,
                "species_taxid": 414286,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinivibrio sharmensis",
                "strain": "strain=DSM 18182",
                "accession": "GCA_001995985.1",
                "taxid": 390883,
                "species_taxid": 390883,
                "relation_to_type": "type",
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                "ani": 91.9556,
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                "total_fragments": 1111,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinivibrio costicola subsp. alcaliphilus",
                "strain": "strain=DSM 16359",
                "accession": "GCA_001996185.1",
                "taxid": 272773,
                "species_taxid": 51367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3779,
                "matched_fragments": 778,
                "total_fragments": 1111,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinivibrio proteolyticus",
                "strain": "strain=DSM 19052",
                "accession": "GCA_001996165.1",
                "taxid": 334715,
                "species_taxid": 334715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0939,
                "matched_fragments": 753,
                "total_fragments": 1111,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinivibrio socompensis",
                "strain": "strain=S35",
                "accession": "GCA_000513715.1",
                "taxid": 1510206,
                "species_taxid": 1510206,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1118,
                "matched_fragments": 738,
                "total_fragments": 1111,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium salinisoli",
                "strain": "strain=LAM9072",
                "accession": "GCA_003614885.1",
                "taxid": 1616783,
                "species_taxid": 1616783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4626,
                "matched_fragments": 106,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio toranzoniae",
                "strain": "strain=CECT 7225",
                "accession": "GCA_024347655.1",
                "taxid": 1194427,
                "species_taxid": 1194427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2126,
                "matched_fragments": 75,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio rarus",
                "strain": "strain=LMG 23674",
                "accession": "GCA_024347075.1",
                "taxid": 413403,
                "species_taxid": 413403,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0249,
                "matched_fragments": 59,
                "total_fragments": 1111,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_005280275.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Salinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "97.28",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001996005.1",
                "gtdb_species": "s__Salinivibrio siamensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Salinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
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                "num_clustered_genomes": 15,
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            },
            {
                "accession": "GCF_001995985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Salinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
                "accession": "GCF_900141775.1",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_000565345.1",
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            },
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                "accession": "GCF_001996165.1",
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            },
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                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.304,
        "cell_length": 0.458,
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        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.333,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
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        "kushneri"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}