{ "type": "genome", "identifier": "GCF_001999325.1", "organism": "Thioalkalivibrio versutus", "title": "Thioalkalivibrio versutus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Amsterdam", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001999325.1", "bioproject": "PRJNA224116", "biosample": "SAMN06311538", "wgs_master": "MVAR00000000.1", "refseq_category": "na", "taxid": "106634", "species_taxid": "106634", "organism_name": "Thioalkalivibrio versutus", "infraspecific_name": "strain=AL 2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/02/13", "asm_name": "ASM199932v1", "asm_submitter": "University of Amsterdam", "gbrs_paired_asm": "GCA_001999325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/999/325/GCF_001999325.1_ASM199932v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2835344", "genome_size_ungapped": "2834448", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-20", "total_gene_count": "2706", "protein_coding_gene_count": "2601", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-02-13", "dateModified": "2017-02-13", "datePublished": "2017-02-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Thioalkalivibrio versutus" ], "sample_taxid": [ "106634" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Siberia" ], "sample_host_location_id": [], "data_size": "0.786 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2835344", "Number of Sequences": "58", "Longest Sequences (bp)": "215441", "N50 (bp)": "101375", "Gap Ratio (%)": "0.032448", "GCcontent (%)": "66.4", "Number of CDSs": "2628", "Average Protein Length": "317.9", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thioalkalivibrio versutus", "strain": "strain=AL 2", "accession": "GCA_001999325.1", "taxid": 106634, "species_taxid": 106634, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 915, "total_fragments": 918, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thioalkalivibrio thiocyanoxidans", "strain": "strain=ARh2", "accession": "GCA_000385215.1", "taxid": 152475, "species_taxid": 152475, "relation_to_type": "type", "validated": true, "ani": 83.6282, "matched_fragments": 597, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio halophilus", "strain": "strain=HL17", "accession": "GCA_001995255.1", "taxid": 252474, "species_taxid": 252474, "relation_to_type": "type", "validated": true, "ani": 81.3929, "matched_fragments": 526, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio paradoxus", "strain": "strain=ARh 1", "accession": "GCA_000227685.3", "taxid": 108010, "species_taxid": 108010, "relation_to_type": "type", "validated": true, "ani": 78.7573, "matched_fragments": 311, "total_fragments": 918, "ani_threshold": 95, "status": "below_threshold" }, { 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