{ "tc_result": [ { "organism_name": "Rodentibacter trehalosifermentans", "strain": "strain=H1987082031", "accession": "GCA_002000545.1", "taxid": 1908263, "species_taxid": 1908263, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 790, "total_fragments": 797, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rodentibacter rarus", "strain": "strain=CCUG 17206", "accession": "GCA_001998965.1", "taxid": 1908260, "species_taxid": 1908260, "relation_to_type": "type", "validated": true, "ani": 89.5184, "matched_fragments": 555, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter heidelbergensis", "strain": "strain=Ac69", "accession": "GCA_002000125.1", "taxid": 1908258, "species_taxid": 1908258, "relation_to_type": "type", "validated": true, "ani": 88.1029, "matched_fragments": 526, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter ratti", "strain": "strain=F75", "accession": "GCA_002000485.1", "taxid": 1906745, "species_taxid": 1906745, "relation_to_type": "type", "validated": true, "ani": 84.9379, "matched_fragments": 497, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter pneumotropicus", "strain": "strain=DSM 21403", "accession": "GCA_000379905.1", "taxid": 758, "species_taxid": 758, "relation_to_type": "type", "validated": true, "ani": 83.5657, "matched_fragments": 507, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter pneumotropicus", "strain": "strain=ATCC 35149", "accession": "GCA_000730685.1", "taxid": 758, "species_taxid": 758, "relation_to_type": "type", "validated": true, "ani": 83.4786, "matched_fragments": 509, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter myodis", "strain": "strain=Ac151", "accession": "GCA_001999305.1", "taxid": 1907939, "species_taxid": 1907939, "relation_to_type": "type", "validated": true, "ani": 80.6114, "matched_fragments": 483, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter haemolyticus", "strain": "strain=DSM 111151", "accession": "GCA_015356115.1", "taxid": 2778911, "species_taxid": 2778911, "relation_to_type": "type", "validated": true, "ani": 79.9611, "matched_fragments": 435, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter kilianii", "strain": "strain=PN_528", "accession": "GCA_003130255.1", "taxid": 2025884, "species_taxid": 2025884, "relation_to_type": "type", "validated": true, "ani": 78.1633, "matched_fragments": 232, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002000545.1", "gtdb_species": "s__Rodentibacter trehalosifermentans", "ani": 100.0, "matched_fragments": 790, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "97.91", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001998965.1", "gtdb_species": "s__Rodentibacter rarus", "ani": 89.4792, "matched_fragments": 557, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "99.19", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002000125.1", "gtdb_species": "s__Rodentibacter heidelbergensis", "ani": 88.0844, "matched_fragments": 527, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002000485.1", "gtdb_species": "s__Rodentibacter ratti", "ani": 84.9362, "matched_fragments": 498, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.24", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001999285.1", "gtdb_species": "s__Rodentibacter sp001999285", "ani": 83.8475, "matched_fragments": 555, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000379905.1", "gtdb_species": "s__Rodentibacter pneumotropicus", "ani": 83.5591, "matched_fragments": 506, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_001999425.1", "gtdb_species": "s__Rodentibacter sp001999425", "ani": 82.641, "matched_fragments": 504, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001019715.1", "gtdb_species": "s__Rodentibacter heylii", "ani": 82.3316, "matched_fragments": 513, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "95.96", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_001999305.1", "gtdb_species": "s__Rodentibacter myodis", "ani": 80.6114, "matched_fragments": 483, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015356115.1", "gtdb_species": "s__Rodentibacter sp015356115", "ani": 79.9678, "matched_fragments": 434, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_901420285.1", "gtdb_species": "s__Rodentibacter sp901420285", "ani": 79.2603, "matched_fragments": 320, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003130075.1", "gtdb_species": "s__Aggregatibacter segnis_A", "ani": 78.2414, "matched_fragments": 196, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.43", "min_intra_species_ani": "95.32", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003130255.1", "gtdb_species": "s__Aggregatibacter kilianii", "ani": 78.1531, "matched_fragments": 232, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000372365.1", "gtdb_species": "s__Aggregatibacter actinomycetemcomitans", "ani": 78.0674, "matched_fragments": 180, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 80, "status": "-" } ] }