{
    "type": "genome",
    "identifier": "GCF_002003465.1",
    "organism": "Caenibacillus caldisaponilyticus",
    "title": "Caenibacillus caldisaponilyticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyoto Prefectural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002003465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00051327",
        "wgs_master": "BDDQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1674942",
        "species_taxid": "1674942",
        "organism_name": "Caenibacillus caldisaponilyticus",
        "infraspecific_name": "strain=B157",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/27",
        "asm_name": "B157_assembly01",
        "asm_submitter": "Kyoto Prefectural University",
        "gbrs_paired_asm": "GCA_002003465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/003/465/GCF_002003465.1_B157_assembly01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3356119",
        "genome_size_ungapped": "3356119",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "181",
        "contig_count": "181",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002003465.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "3318",
        "protein_coding_gene_count": "3084",
        "non_coding_gene_count": "94",
        "pubmed_id": "28360164;27117268"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-27",
    "dateModified": "2017-01-27",
    "datePublished": "2017-01-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caenibacillus caldisaponilyticus"
        ],
        "sample_taxid": [
            "1674942"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Ibaraki"
        ],
        "sample_host_location_id": [],
        "data_size": "0.945 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.52,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3356119",
        "Number of Sequences": "181",
        "Longest Sequences (bp)": "183846",
        "N50 (bp)": "60783",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.8",
        "Number of CDSs": "3115",
        "Average Protein Length": "276.3",
        "Coding Ratio (%)": "76.9",
        "Number of rRNAs": "7",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Caenibacillus caldisaponilyticus",
                "strain": "strain=B157",
                "accession": "GCA_002003465.1",
                "taxid": 1674942,
                "species_taxid": 1674942,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1019,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Caldibacillus debilis",
                "strain": "strain=DSM 16016",
                "accession": "GCA_000383875.1",
                "taxid": 301148,
                "species_taxid": 301148,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7936,
                "matched_fragments": 72,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus icigianus",
                "strain": "strain=G1w1",
                "accession": "GCA_000750005.1",
                "taxid": 1430331,
                "species_taxid": 1430331,
                "relation_to_type": "type",
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                "ani": 76.7666,
                "matched_fragments": 78,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.52,
            "strain_heterogeneity": 100.0
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        "gtdb_result": [
            {
                "accession": "GCF_002003465.1",
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                "ani": 100.0,
                "matched_fragments": 1019,
                "total_fragments": 1030,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Caenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000383875.1",
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                "matched_fragments": 73,
                "total_fragments": 1030,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__DSM-16016;f__Caldibacillaceae;g__Caldibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001544135.1",
                "gtdb_species": "s__Geobacillus zalihae",
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                "matched_fragments": 83,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
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                "min_intra_species_ani": "97.08",
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                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000750005.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_001610955.1",
                "gtdb_species": "s__Geobacillus thermoleovorans",
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                "total_fragments": 1030,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
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                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 28,
                "status": "-"
            },
            {
                "accession": "GCF_001908025.1",
                "gtdb_species": "s__Geobacillus proteiniphilus",
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                "matched_fragments": 91,
                "total_fragments": 1030,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.9151,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.36",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002809955.1",
                "gtdb_species": "s__Geobacillus sp002809955",
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                "matched_fragments": 73,
                "total_fragments": 1030,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 96.916,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "97.25",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 55.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Caenibacillus",
        "caldisaponilyticus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}