{ "type": "genome", "identifier": "GCF_002005305.1", "organism": "Shewanella psychrophila", "title": "Shewanella psychrophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Jiao Tong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002005305.1", "bioproject": "PRJNA224116", "biosample": "SAMN04370084", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "225848", "species_taxid": "225848", "organism_name": "Shewanella psychrophila", "infraspecific_name": "strain=WP2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/02/21", "asm_name": "ASM200530v1", "asm_submitter": "Shanghai Jiao Tong University", "gbrs_paired_asm": "GCA_002005305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/005/305/GCF_002005305.1_ASM200530v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6353406", "genome_size_ungapped": "6353406", "gc_percent": "44.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "5583", "protein_coding_gene_count": "5338", "non_coding_gene_count": "135", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-02-21", "dateModified": "2017-02-21", "datePublished": "2017-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella psychrophila" ], "sample_taxid": [ "225848" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella psychropiezotolerans", "strain": "strain=YLB-06", "accession": "GCA_007197555.1", "taxid": 2593655, "species_taxid": 2593655, "relation_to_type": "type", "validated": true, "ani": 88.0879, "matched_fragments": 1759, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella benthica", "strain": "strain=DSM 8812", "accession": "GCA_015069875.1", "taxid": 43661, "species_taxid": 43661, "relation_to_type": "type", "validated": true, "ani": 86.2989, "matched_fragments": 1044, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella violacea", "strain": "strain=DSS12", "accession": "GCA_000091325.1", "taxid": 60217, "species_taxid": 60217, "relation_to_type": "type", "validated": true, "ani": 84.607, "matched_fragments": 1289, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella eurypsychrophilus", "strain": "strain=YLB-08", "accession": "GCA_007004545.3", "taxid": 2593656, "species_taxid": 2593656, "relation_to_type": "type", "validated": true, "ani": 82.6373, "matched_fragments": 1113, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella atlantica", "strain": "strain=HAW-EB5", "accession": "GCA_003966265.1", "taxid": 271099, "species_taxid": 271099, "relation_to_type": "type", "validated": true, "ani": 79.6183, "matched_fragments": 601, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella woodyi", "strain": "strain=ATCC 51908", "accession": "GCA_000019525.1", "taxid": 60961, "species_taxid": 60961, "relation_to_type": "type", "validated": true, "ani": 79.4385, "matched_fragments": 571, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella nanhaiensis", "strain": 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