{
    "type": "genome",
    "identifier": "GCF_002005405.1",
    "organism": "Jeotgalibaca dankookensis",
    "title": "Jeotgalibaca dankookensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyung Hee University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002005405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06241153",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "708126",
        "species_taxid": "708126",
        "organism_name": "Jeotgalibaca dankookensis",
        "infraspecific_name": "strain=EX-07",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/02/21",
        "asm_name": "ASM200540v1",
        "asm_submitter": "Kyung Hee University",
        "gbrs_paired_asm": "GCA_002005405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/005/405/GCF_002005405.1_ASM200540v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2116498",
        "genome_size_ungapped": "2116498",
        "gc_percent": "37.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-05",
        "total_gene_count": "2107",
        "protein_coding_gene_count": "1978",
        "non_coding_gene_count": "99",
        "pubmed_id": "24554638"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-02-21",
    "dateModified": "2017-02-21",
    "datePublished": "2017-02-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Jeotgalibaca dankookensis"
        ],
        "sample_taxid": [
            "708126"
        ],
        "sample_host_organism": [
            "seujeot"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.598 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2116498",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2096058",
        "N50 (bp)": "2096058",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "2033",
        "Average Protein Length": "308.4",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "18",
        "Number of tRNAs": "77",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Jeotgalibaca dankookensis",
                "strain": "strain=EX-07",
                "accession": "GCA_002005405.1",
                "taxid": 708126,
                "species_taxid": 708126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 704,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Jeotgalibaca dankookensis",
                "strain": "strain=KCCM 90229",
                "accession": "GCA_001192875.1",
                "taxid": 708126,
                "species_taxid": 708126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9469,
                "matched_fragments": 651,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Carnobacterium jeotgali",
                "strain": "strain=MS3",
                "accession": "GCA_000745125.1",
                "taxid": 545534,
                "species_taxid": 545534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7018,
                "matched_fragments": 55,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalibaca porci",
                "strain": "strain=CCUG 69148",
                "accession": "GCA_011299095.1",
                "taxid": 1868793,
                "species_taxid": 1868793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4856,
                "matched_fragments": 139,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002005405.1",
                "gtdb_species": "s__Jeotgalibaca dankookensis",
                "ani": 100.0,
                "matched_fragments": 703,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Jeotgalibaca",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000745125.1",
                "gtdb_species": "s__Carnobacterium_A jeotgali",
                "ani": 79.686,
                "matched_fragments": 56,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Carnobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_011299095.1",
                "gtdb_species": "s__Jeotgalibaca porci",
                "ani": 79.5142,
                "matched_fragments": 139,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Jeotgalibaca",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003955755.1",
                "gtdb_species": "s__Jeotgalibaca ciconiae",
                "ani": 78.91,
                "matched_fragments": 120,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Jeotgalibaca",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2096016.5,
        "gc_content": 37.437,
        "coding_genes": 1986.5,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 77.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Jeotgalibaca",
        "dankookensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}