{ "tc_result": [ { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_002006445.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1788, "total_fragments": 1803, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_018223745.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9952, "matched_fragments": 1803, "total_fragments": 1803, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=NCTC13035", "accession": "GCA_900447025.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9933, "matched_fragments": 1794, "total_fragments": 1803, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Clostridium diolis", "strain": "strain=DSM 15410", "accession": "GCA_008580445.1", "taxid": 223919, "species_taxid": 223919, "relation_to_type": "suspected-type", "validated": true, "ani": 98.2692, "matched_fragments": 1607, "total_fragments": 1803, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Clostridium diolis", "strain": "strain=DSM 15410", "accession": "GCA_008705175.1", "taxid": 223919, "species_taxid": 223919, "relation_to_type": "suspected-type", "validated": true, "ani": 98.2136, "matched_fragments": 1623, "total_fragments": 1803, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Clostridium gelidum", "strain": "strain=C5S11", "accession": "GCA_019977655.1", "taxid": 704125, "species_taxid": 704125, "relation_to_type": "type", "validated": true, "ani": 81.0488, "matched_fragments": 898, "total_fragments": 1803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium butyricum", "strain": "strain=NBRC 13949", "accession": "GCA_006742065.1", "taxid": 1492, "species_taxid": 1492, "relation_to_type": "type", "validated": true, "ani": 78.9587, "matched_fragments": 480, "total_fragments": 1803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium butyricum", "strain": "strain=DSM 10702", "accession": "GCA_014131795.1", "taxid": 1492, "species_taxid": 1492, "relation_to_type": "type", "validated": true, "ani": 78.8472, "matched_fragments": 475, "total_fragments": 1803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium butyricum", "strain": "strain=NBRC 13949", "accession": "GCA_007992895.1", "taxid": 1492, "species_taxid": 1492, "relation_to_type": "type", "validated": true, "ani": 78.7418, "matched_fragments": 453, "total_fragments": 1803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium butyricum", "strain": "strain=DSM 10702", "accession": "GCA_000409755.1", "taxid": 1492, "species_taxid": 1492, "relation_to_type": "type", "validated": true, "ani": 78.6682, "matched_fragments": 453, "total_fragments": 1803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cagae", "strain": "strain=Marseille-P4344", "accession": "GCA_900290265.1", "taxid": 2080751, "species_taxid": 2080751, "relation_to_type": "type", "validated": true, "ani": 78.6614, "matched_fragments": 389, "total_fragments": 1803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium weizhouense", "strain": "strain=YB-6", "accession": "GCA_019431045.1", "taxid": 2859781, "species_taxid": 2859781, "relation_to_type": "type", "validated": true, "ani": 78.4709, "matched_fragments": 446, "total_fragments": 1803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina latercula", "strain": "strain=DSM 2041", "accession": "GCA_000430645.1", "taxid": 987, "species_taxid": 987, "relation_to_type": "type", "validated": true, "ani": 74.6392, "matched_fragments": 51, "total_fragments": 1803, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018223745.1", "gtdb_species": "s__Clostridium beijerinckii", "ani": 99.9952, "matched_fragments": 1803, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.01", "min_intra_species_ani": "95.18", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.79", "num_clustered_genomes": 244, "status": "conclusive" }, { "accession": "GCF_000621745.1", "gtdb_species": "s__Clostridium beijerinckii_A", "ani": 92.3071, "matched_fragments": 1470, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002029255.1", "gtdb_species": "s__Clostridium chromiireducens", "ani": 82.7047, "matched_fragments": 960, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000230835.1", "gtdb_species": "s__Clostridium sp000230835", "ani": 81.7073, "matched_fragments": 974, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.12", "min_intra_species_ani": "96.12", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002760435.1", "gtdb_species": "s__Clostridium sp002760435", "ani": 81.6541, "matched_fragments": 927, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003129525.1", "gtdb_species": "s__Clostridium beijerinckii_D", "ani": 81.5073, "matched_fragments": 812, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002006345.1", "gtdb_species": "s__Clostridium puniceum", "ani": 80.9242, "matched_fragments": 811, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000340885.1", "gtdb_species": "s__Clostridium saccharoperbutylacetonicum", "ani": 80.8625, "matched_fragments": 849, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000473995.1", "gtdb_species": "s__Clostridium saccharobutylicum", "ani": 80.6271, "matched_fragments": 728, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.83", "num_clustered_genomes": 65, "status": "-" }, { "accession": "GCF_009928485.1", "gtdb_species": "s__Clostridium sp009928485", "ani": 80.4835, "matched_fragments": 799, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006742065.1", "gtdb_species": "s__Clostridium butyricum", "ani": 78.9415, "matched_fragments": 478, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 64, "status": "-" }, { "accession": "GCF_900290265.1", "gtdb_species": "s__Clostridium cagae", "ani": 78.6641, "matched_fragments": 387, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "97.56", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_001735765.2", "gtdb_species": "s__Clostridium taeniosporum", "ani": 78.4417, "matched_fragments": 385, "total_fragments": 1803, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }