{
    "type": "genome",
    "identifier": "GCF_002008275.1",
    "organism": "Agrobacterium pusense",
    "title": "Agrobacterium pusense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeast institute of Geography and Agroecology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002008275.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06074345",
        "wgs_master": "MRDJ00000000.1",
        "refseq_category": "na",
        "taxid": "648995",
        "species_taxid": "648995",
        "organism_name": "Agrobacterium pusense",
        "infraspecific_name": "strain=NRCPB10",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/02/28",
        "asm_name": "ASM200827v1",
        "asm_submitter": "Northeast institute of Geography and Agroecology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_002008275.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/008/275/GCF_002008275.1_ASM200827v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5271321",
        "genome_size_ungapped": "5271279",
        "gc_percent": "59.000000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-26",
        "total_gene_count": "5068",
        "protein_coding_gene_count": "4931",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-02-28",
    "dateModified": "2017-02-28",
    "datePublished": "2017-02-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Agrobacterium pusense"
        ],
        "sample_taxid": [
            "648995"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.482 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5271321",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "913741",
        "N50 (bp)": "286695",
        "Gap Ratio (%)": "0.001138",
        "GCcontent (%)": "59.2",
        "Number of CDSs": "5081",
        "Average Protein Length": "302.6",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhizobium pusense",
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                "relation_to_type": "type",
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            {
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            },
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                "status": "below_threshold"
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                "species_taxid": 358,
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                "status": "below_threshold"
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                "organism_name": "Agrobacterium tumefaciens",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium tumefaciens",
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                "validated": true,
                "ani": 88.4121,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium salinitolerans",
                "strain": "strain=YIC 5082",
                "accession": "GCA_002008225.1",
                "taxid": 1183413,
                "species_taxid": 1183413,
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                "validated": true,
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                "matched_fragments": 1326,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Shinella zoogloeoides",
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                "accession": "GCA_020883495.1",
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                "species_taxid": 352475,
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                "status": "below_threshold"
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                "species_taxid": 2867518,
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                "matched_fragments": 625,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Rhizobium dioscoreae",
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                "species_taxid": 2653122,
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                "ani": 78.7598,
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                "status": "below_threshold"
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            "contamination": 0.0,
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                "accession": "GCF_900102105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
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                "accession": "GCF_002943835.1",
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}