{ "tc_result": [ { "organism_name": "Haemophilus paraphrohaemolyticus", "strain": "strain=CCUG 3718", "accession": "GCA_002015045.1", "taxid": 736, "species_taxid": 736, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 672, "total_fragments": 673, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Haemophilus parahaemolyticus", "strain": "strain=NCTC 8479", "accession": "GCA_900450675.1", "taxid": 735, "species_taxid": 735, "relation_to_type": "type", "validated": true, "ani": 91.1004, "matched_fragments": 521, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus parahaemolyticus", "strain": "strain=HK385", "accession": "GCA_000262265.1", "taxid": 735, "species_taxid": 735, "relation_to_type": "type", "validated": true, "ani": 91.0828, "matched_fragments": 506, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus parahaemolyticus", "strain": "strain=FDAARGOS_1199", "accession": "GCA_016889385.1", "taxid": 735, "species_taxid": 735, "relation_to_type": "type", "validated": true, "ani": 91.0611, "matched_fragments": 517, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus parahaemolyticus", "strain": "strain=CCUG 3716", "accession": "GCA_002015035.1", "taxid": 735, "species_taxid": 735, "relation_to_type": "type", "validated": true, "ani": 91.0024, "matched_fragments": 520, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus sputorum", "strain": "strain=CCUG 13788", "accession": "GCA_000238795.2", "taxid": 1078480, "species_taxid": 1078480, "relation_to_type": "type", "validated": true, "ani": 81.1715, "matched_fragments": 286, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus minor", "strain": "strain=NM305", "accession": "GCA_000175195.1", "taxid": 51047, "species_taxid": 51047, "relation_to_type": "type", "validated": true, "ani": 79.7468, "matched_fragments": 274, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus ureae", "strain": "strain=ATCC 25976", "accession": "GCA_000188255.1", "taxid": 723, "species_taxid": 723, "relation_to_type": "type", "validated": true, "ani": 79.4755, "matched_fragments": 244, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinobacillus suis", "strain": "strain=ATCC 33415", "accession": "GCA_000739435.1", "taxid": 716, "species_taxid": 716, "relation_to_type": "type", "validated": true, "ani": 79.0921, "matched_fragments": 269, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002015045.1", "gtdb_species": "s__Haemophilus_A paraphrohaemolyticus", "ani": 100.0, "matched_fragments": 672, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "95.26", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_002015035.1", "gtdb_species": "s__Haemophilus_A parahaemolyticus", "ani": 91.0094, "matched_fragments": 520, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "95.62", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.88", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_018373095.1", "gtdb_species": "s__Haemophilus_A parahaemolyticus_A", "ani": 89.6754, "matched_fragments": 433, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000238795.1", "gtdb_species": "s__Haemophilus_A sputorum", "ani": 81.1341, "matched_fragments": 289, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.57", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003101015.1", "gtdb_species": "s__Actinobacillus_A porcitonsillarum", "ani": 79.8808, "matched_fragments": 287, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000175195.1", "gtdb_species": "s__Actinobacillus_A minor", "ani": 79.7762, "matched_fragments": 272, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013377235.1", "gtdb_species": "s__Mannheimia varigena", "ani": 79.2019, "matched_fragments": 226, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mannheimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_901687125.1", "gtdb_species": "s__Actinobacillus vicugnae", "ani": 79.0807, "matched_fragments": 255, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000521605.1", "gtdb_species": "s__Mannheimia sp000521605", 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"total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mannheimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002015115.1", "gtdb_species": "s__Haemophilus_E paracuniculus", "ani": 78.5264, "matched_fragments": 181, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345745.1", "gtdb_species": "s__Nicoletella semolina", "ani": 78.2947, "matched_fragments": 114, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Nicoletella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }