{
    "type": "genome",
    "identifier": "GCF_002018575.1",
    "organism": "Xanthomonas citri pv. citri",
    "title": "Xanthomonas citri pv. citri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CSIR-Institute of Microbial Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002018575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05571463",
        "wgs_master": "MDJT00000000.1",
        "refseq_category": "na",
        "taxid": "611301",
        "species_taxid": "346",
        "organism_name": "Xanthomonas citri pv. citri",
        "infraspecific_name": "strain=LMG9322",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/06",
        "asm_name": "ASM201857v1",
        "asm_submitter": "CSIR-Institute of Microbial Technology",
        "gbrs_paired_asm": "GCA_002018575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/018/575/GCF_002018575.1_ASM201857v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5141632",
        "genome_size_ungapped": "5141632",
        "gc_percent": "64.500000",
        "replicon_count": "0",
        "scaffold_count": "206",
        "contig_count": "206",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002018575.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "4515",
        "protein_coding_gene_count": "4232",
        "non_coding_gene_count": "93",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-06",
    "dateModified": "2017-03-06",
    "datePublished": "2017-03-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Xanthomonas citri pv. citri"
        ],
        "sample_taxid": [
            "611301"
        ],
        "sample_host_organism": [
            "Citrus x aurantiifolia"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Florida"
        ],
        "sample_host_location_id": [],
        "data_size": "1.427 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5141632",
        "Number of Sequences": "206",
        "Longest Sequences (bp)": "366657",
        "N50 (bp)": "84312",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.6",
        "Number of CDSs": "4315",
        "Average Protein Length": "329.4",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Xanthomonas citri",
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                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 1622,
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            {
                "organism_name": "Xanthomonas citri",
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                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.679,
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                "status": "inconclusive"
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                "status": "inconclusive"
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            {
                "organism_name": "Xanthomonas citri",
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                "species_taxid": 346,
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                "ani": 98.7988,
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                "status": "inconclusive"
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            {
                "organism_name": "Xanthomonas citri",
                "strain": "strain=ICMP5732",
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Xanthomonas citri",
                "strain": "strain=LMG712",
                "accession": "GCA_002019125.1",
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                "species_taxid": 346,
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                "ani": 98.7769,
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            },
            {
                "organism_name": "Xanthomonas citri",
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                "accession": "GCA_000285775.1",
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                "species_taxid": 346,
                "relation_to_type": "pathovar",
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                "ani": 98.7134,
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                "ani_threshold": 95,
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            },
            {
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            },
            {
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                "ani": 98.462,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Xanthomonas cissicola",
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                "organism_name": "Xanthomonas cissicola",
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                "status": "inconclusive"
            },
            {
                "organism_name": "Xanthomonas euvesicatoria",
                "strain": "strain=ATCC 11633",
                "accession": "GCA_020880415.1",
                "taxid": 456327,
                "species_taxid": 456327,
                "relation_to_type": "type",
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                "ani": 94.3401,
                "matched_fragments": 1398,
                "total_fragments": 1629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas hydrangeae",
                "strain": "strain=LMG 31884",
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                "taxid": 2775159,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Xanthomonas fragariae",
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                "accession": "GCA_900380235.1",
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                "relation_to_type": "type",
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            },
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                "matched_fragments": 1035,
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        "gtdb_result": [
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                "accession": "GCF_008801575.1",
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    "_bac2feature": {
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    "_genome_taxon": [
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}