{ "type": "genome", "identifier": "GCF_002019645.1", "organism": "Litchfieldia alkalitelluris", "title": "Litchfieldia alkalitelluris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002019645.1", "bioproject": "PRJNA224116", "biosample": "SAMN05934581", "wgs_master": "MTIS00000000.1", "refseq_category": "reference genome", "taxid": "304268", "species_taxid": "304268", "organism_name": "Litchfieldia alkalitelluris", "infraspecific_name": "strain=DSM 16976", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/06", "asm_name": "ASM201964v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_002019645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/019/645/GCF_002019645.1_ASM201964v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5427045", "genome_size_ungapped": "5417424", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002019645.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5115", "protein_coding_gene_count": "4850", "non_coding_gene_count": "180", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-06", "dateModified": "2017-03-06", "datePublished": "2017-03-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Litchfieldia alkalitelluris" ], "sample_taxid": [ "304268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.513 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5427045", "Number of Sequences": "2", "Longest Sequences (bp)": "5426306", "N50 (bp)": "5426306", "Gap Ratio (%)": "0.177279", "GCcontent (%)": "36.3", "Number of CDSs": "5027", "Average Protein Length": "283.1", "Coding Ratio (%)": "78.7", "Number of rRNAs": "47", "Number of tRNAs": "124", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litchfieldia alkalitelluris", "strain": "strain=DSM 16976", "accession": "GCA_002019645.1", "taxid": 304268, "species_taxid": 304268, 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"below_threshold" }, { "organism_name": "Ectobacillus panaciterrae", "strain": "strain=DSM 19096", "accession": "GCA_000430785.1", "taxid": 363872, "species_taxid": 363872, "relation_to_type": "type", "validated": true, "ani": 77.3962, "matched_fragments": 74, "total_fragments": 1808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus subterraneus", "strain": "strain=DSM 13966", "accession": "GCA_003937825.1", "taxid": 285983, "species_taxid": 285983, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2848, "matched_fragments": 77, "total_fragments": 1808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus alkaliphilus", "strain": "strain=B16-10", "accession": "GCA_004116265.1", "taxid": 1548597, "species_taxid": 1548597, "relation_to_type": "type", "validated": true, "ani": 77.2388, "matched_fragments": 101, "total_fragments": 1808, "ani_threshold": 95, "status": "below_threshold" }, { 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