{ "type": "genome", "identifier": "GCF_002020135.1", "organism": "Thioclava marina", "title": "Thioclava marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Thioclava sp. 11.10-0-13 (MCCC 1A03502) is available from MCCC (Marine Culture Collection of China) (http://www.mccc.org.cn/).", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002020135.1", "bioproject": "PRJNA224116", "biosample": "SAMN05969897", "wgs_master": "MPZS00000000.1", "refseq_category": "reference genome", "taxid": "1915077", "species_taxid": "1915077", "organism_name": "Thioclava marina", "infraspecific_name": "strain=11.10-0-13", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/06", "asm_name": "ASM202013v1", "asm_submitter": "Thioclava sp. 11.10-0-13 (MCCC 1A03502) is available from MCCC (Marine Culture Collection of China) (http://www.mccc.org.cn/).", "gbrs_paired_asm": "GCA_002020135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/020/135/GCF_002020135.1_ASM202013v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3653331", "genome_size_ungapped": "3653331", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002020135.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3512", "protein_coding_gene_count": "3455", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-06", "dateModified": "2017-03-06", "datePublished": "2017-03-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Thioclava marina" ], 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78.2728, "matched_fragments": 350, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 77.9398, "matched_fragments": 308, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 77.7211, "matched_fragments": 329, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": "type", "validated": true, "ani": 77.6502, "matched_fragments": 265, "total_fragments": 1215, 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85.0334, "matched_fragments": 911, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thioclava", "ani_circumscription_radius": 96.2561, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "96.29", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000737065.1", "gtdb_species": "s__Thioclava atlantica", "ani": 84.8845, "matched_fragments": 883, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thioclava", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001940525.2", "gtdb_species": "s__Thioclava nitratireducens", "ani": 84.6566, "matched_fragments": 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