{ "type": "genome", "identifier": "GCF_002021565.1", "organism": "Paenibacillus selenitireducens", "title": "Paenibacillus selenitireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002021565.1", "bioproject": "PRJNA224116", "biosample": "SAMN06191537", "wgs_master": "MSZX00000000.1", "refseq_category": "reference genome", "taxid": "1324314", "species_taxid": "1324314", "organism_name": "Paenibacillus selenitireducens", "infraspecific_name": "strain=ES3-24", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/06", "asm_name": "ASM202156v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_002021565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/021/565/GCF_002021565.1_ASM202156v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6890642", "genome_size_ungapped": "6890642", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002021565.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "6523", "protein_coding_gene_count": "6323", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-06", "dateModified": "2017-03-06", "datePublished": "2017-03-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus selenitireducens" ], "sample_taxid": [ "1324314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Enshi" ], "sample_host_location_id": [], "data_size": "1.969 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6890642", "Number of Sequences": "44", "Longest Sequences (bp)": "857983", "N50 (bp)": "435853", "Gap Ratio (%)": "0.001974", "GCcontent (%)": "44.9", "Number of CDSs": "6475", "Average Protein Length": "306.7", "Coding Ratio (%)": "86.5", "Number of rRNAs": "10", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus selenitireducens", "strain": "strain=ES3-24", "accession": "GCA_002021565.1", "taxid": 1324314, "species_taxid": 1324314, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2272, "total_fragments": 2275, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus terrigena", "strain": "strain=DSM 21567", "accession": "GCA_000374845.1", "taxid": 369333, "species_taxid": 369333, "relation_to_type": "type", "validated": true, "ani": 81.8471, "matched_fragments": 764, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus guangzhouensis", "strain": "strain=KCTC 33171", "accession": "GCA_009363075.1", "taxid": 1473112, "species_taxid": 1473112, "relation_to_type": "type", "validated": true, "ani": 80.9043, "matched_fragments": 752, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus wynnii", "strain": "strain=DSM 18334", "accession": "GCA_000757885.1", "taxid": 268407, "species_taxid": 268407, "relation_to_type": "type", "validated": 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2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus castaneae", "strain": "strain=DSM 19417", "accession": "GCA_002884445.1", "taxid": 474957, "species_taxid": 474957, "relation_to_type": "type", "validated": true, "ani": 78.0243, "matched_fragments": 135, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xylanexedens", "strain": "strain=DSM 21292", "accession": "GCA_017874615.1", "taxid": 528191, "species_taxid": 528191, "relation_to_type": "suspected-type", "validated": true, "ani": 77.852, "matched_fragments": 119, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pabuli", "strain": "strain=NBRC 13638", "accession": "GCA_001514495.1", "taxid": 1472, "species_taxid": 1472, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7293, "matched_fragments": 121, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus solani", "strain": "strain=FJAT-22460", "accession": "GCA_001277345.1", "taxid": 1705565, "species_taxid": 1705565, "relation_to_type": "type", "validated": true, "ani": 77.7243, "matched_fragments": 140, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus amylolyticus", "strain": "strain=NBRC 15957", "accession": "GCA_004001025.1", "taxid": 1451, "species_taxid": 1451, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6903, "matched_fragments": 113, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus paridis", "strain": "strain=py1325", "accession": "GCA_006345825.1", "taxid": 2583376, "species_taxid": 2583376, "relation_to_type": "type", "validated": true, "ani": 77.5738, "matched_fragments": 112, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus nuruki", "strain": "strain=TI45-13ar", "accession": "GCA_001721045.1", "taxid": 1886670, "species_taxid": 1886670, "relation_to_type": "type", "validated": true, "ani": 77.2902, "matched_fragments": 83, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus barcinonensis", "strain": "strain=CECT 7022", "accession": "GCA_003217495.1", "taxid": 198119, "species_taxid": 198119, "relation_to_type": "type", "validated": true, "ani": 77.2345, "matched_fragments": 92, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus nanensis", "strain": "strain=DSM 22867", "accession": "GCA_003583765.1", "taxid": 393251, "species_taxid": 393251, "relation_to_type": "type", "validated": true, "ani": 77.1816, "matched_fragments": 65, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus doosanensis", "strain": "strain=CAU 1055", "accession": "GCA_025060755.1", "taxid": 1229154, "species_taxid": 1229154, "relation_to_type": "type", "validated": true, "ani": 76.9887, "matched_fragments": 96, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus glycanilyticus", "strain": "strain=NBRC 16618", "accession": "GCA_004000805.1", "taxid": 126569, "species_taxid": 126569, "relation_to_type": "type", "validated": true, "ani": 76.7505, "matched_fragments": 87, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xylaniclasticus", "strain": "strain=NBRC 106381", "accession": "GCA_004001065.1", "taxid": 588083, "species_taxid": 588083, "relation_to_type": "type", "validated": true, "ani": 76.5113, "matched_fragments": 55, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus naphthalenovorans", "strain": "strain=PR-N1", "accession": "GCA_900099895.1", "taxid": 162209, "species_taxid": 162209, "relation_to_type": "type", "validated": true, "ani": 76.3025, "matched_fragments": 51, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002021565.1", "gtdb_species": "s__Paenibacillus_K selenitireducens", "ani": 100.0, "matched_fragments": 2272, "total_fragments": 2275, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000374845.1", "gtdb_species": "s__Paenibacillus_K terrigena", "ani": 81.8473, "matched_fragments": 764, "total_fragments": 2275, "gtdb_taxonomy": 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