{
    "type": "genome",
    "identifier": "GCF_002027385.1",
    "organism": "Azospirillum brasilense",
    "title": "Azospirillum brasilense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hebrew University of Jerusalem",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002027385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02796066",
        "wgs_master": "JPIR00000000.1",
        "refseq_category": "na",
        "taxid": "192",
        "species_taxid": "192",
        "organism_name": "Azospirillum brasilense",
        "infraspecific_name": "strain=Sp 7",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/14",
        "asm_name": "ASM202738v1",
        "asm_submitter": "Hebrew University of Jerusalem",
        "gbrs_paired_asm": "GCA_002027385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/027/385/GCF_002027385.1_ASM202738v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7082765",
        "genome_size_ungapped": "7082765",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "591",
        "contig_count": "591",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002027385.1-RS_2024_08_01",
        "annotation_date": "2024-08-01",
        "total_gene_count": "6819",
        "protein_coding_gene_count": "6557",
        "non_coding_gene_count": "78",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-14",
    "dateModified": "2017-03-14",
    "datePublished": "2017-03-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Azospirillum brasilense"
        ],
        "sample_taxid": [
            "192"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Israel"
        ],
        "sample_host_location_id": [],
        "data_size": "1.940 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7082765",
        "Number of Sequences": "591",
        "Longest Sequences (bp)": "376506",
        "N50 (bp)": "97922",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.4",
        "Number of CDSs": "6332",
        "Average Protein Length": "319.4",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "80",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Azospirillum brasilense",
                "strain": "strain=Sp 7",
                "accession": "GCA_002027385.1",
                "taxid": 192,
                "species_taxid": 192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2218,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Azospirillum brasilense",
                "strain": "strain=Sp 7",
                "accession": "GCA_007827425.1",
                "taxid": 192,
                "species_taxid": 192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9924,
                "matched_fragments": 2221,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Azospirillum brasilense",
                "strain": "strain=Sp 7",
                "accession": "GCA_001315015.1",
                "taxid": 192,
                "species_taxid": 192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9546,
                "matched_fragments": 2014,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Azospirillum brasilense",
                "strain": "strain=Sp 7",
                "accession": "GCA_008274945.1",
                "taxid": 192,
                "species_taxid": 192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9442,
                "matched_fragments": 2181,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Azospirillum formosense",
                "strain": "strain=CC-NFb-7",
                "accession": "GCA_013340925.1",
                "taxid": 861533,
                "species_taxid": 861533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.9214,
                "matched_fragments": 1568,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum argentinense",
                "strain": "strain=Az39",
                "accession": "GCA_000632475.2",
                "taxid": 2970906,
                "species_taxid": 2970906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8979,
                "matched_fragments": 1941,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum tabaci",
                "strain": "strain=W712",
                "accession": "GCA_014596085.1",
                "taxid": 2752310,
                "species_taxid": 2752310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.0075,
                "matched_fragments": 1749,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum cavernae",
                "strain": "strain=K2W22B-5",
                "accession": "GCA_003590795.1",
                "taxid": 2320860,
                "species_taxid": 2320860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9196,
                "matched_fragments": 967,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nisaea acidiphila",
                "strain": "strain=MEBiC11861",
                "accession": "GCA_024662015.1",
                "taxid": 1862145,
                "species_taxid": 1862145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8309,
                "matched_fragments": 261,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Elioraea tepida",
                "strain": "strain=MS-P2",
                "accession": "GCA_019203965.1",
                "taxid": 2843330,
                "species_taxid": 2843330,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1883,
                "matched_fragments": 233,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax avenae subsp. avenae",
                "strain": "strain=ATCC 19860",
                "accession": "GCA_000176855.2",
                "taxid": 80870,
                "species_taxid": 80867,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.8106,
                "matched_fragments": 249,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax cattleyae",
                "strain": "strain=DSM 17101",
                "accession": "GCA_900104515.1",
                "taxid": 80868,
                "species_taxid": 80868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.692,
                "matched_fragments": 263,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax oryzae",
                "strain": "strain=ATCC 19882",
                "accession": "GCA_000687165.1",
                "taxid": 862720,
                "species_taxid": 862720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6485,
                "matched_fragments": 278,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax anthurii",
                "strain": "strain=CFPB 3232",
                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5999,
                "matched_fragments": 284,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax citrulli",
                "strain": "strain=DSM 17060",
                "accession": "GCA_900100305.1",
                "taxid": 80869,
                "species_taxid": 80869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5998,
                "matched_fragments": 233,
                "total_fragments": 2229,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001315015.1",
                "gtdb_species": "s__Azospirillum brasilense",
                "ani": 99.9546,
                "matched_fragments": 2014,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0321,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "95.17",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003119195.2",
                "gtdb_species": "s__Azospirillum baldaniorum",
                "ani": 94.9577,
                "matched_fragments": 1973,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0321,
                "mean_intra_species_ani": "97.20",
                "min_intra_species_ani": "95.48",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_008365405.1",
                "gtdb_species": "s__Azospirillum brasilense_D",
                "ani": 94.5055,
                "matched_fragments": 1897,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003119115.1",
                "gtdb_species": "s__Azospirillum sp003119115",
                "ani": 94.4287,
                "matched_fragments": 1936,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "95.10",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_007827815.1",
                "gtdb_species": "s__Azospirillum brasilense_C",
                "ani": 94.4147,
                "matched_fragments": 1915,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.36",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003349955.1",
                "gtdb_species": "s__Azospirillum brasilense_B",
                "ani": 94.4095,
                "matched_fragments": 1838,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.36",
                "min_intra_species_ani": "95.36",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007827795.1",
                "gtdb_species": "s__Azospirillum brasilense_E",
                "ani": 94.3483,
                "matched_fragments": 1802,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014192915.1",
                "gtdb_species": "s__Azospirillum sp014192915",
                "ani": 94.1179,
                "matched_fragments": 1896,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002245955.1",
                "gtdb_species": "s__Azospirillum brasilense_A",
                "ani": 93.9617,
                "matched_fragments": 1862,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "97.48",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000176855.2",
                "gtdb_species": "s__Acidovorax_A avenae",
                "ani": 75.8219,
                "matched_fragments": 245,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.2137,
                "mean_intra_species_ani": "96.92",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.51",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_900104515.1",
                "gtdb_species": "s__Acidovorax_A cattleyae",
                "ani": 75.7027,
                "matched_fragments": 263,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000687165.1",
                "gtdb_species": "s__Acidovorax_A oryzae",
                "ani": 75.6685,
                "matched_fragments": 277,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.2137,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002397315.1",
                "gtdb_species": "s__Acidovorax_A sp002397315",
                "ani": 75.6143,
                "matched_fragments": 275,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100305.1",
                "gtdb_species": "s__Acidovorax_A citrulli",
                "ani": 75.5865,
                "matched_fragments": 232,
                "total_fragments": 2229,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.02,
        "cell_length": 0.408,
        "doubling_h": null,
        "growth_tmp": 30.5,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.65,
        "genome_size": 7070850.231,
        "gc_content": 68.317,
        "coding_genes": 6223.167,
        "rRNA16S_genes": 9.667,
        "tRNA_genes": 89.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Azospirillum",
        "brasilense"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}