{ "type": "genome", "identifier": "GCF_002029235.1", "organism": "Clostridium oryzae", "title": "Clostridium oryzae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002029235.1", "bioproject": "PRJNA224116", "biosample": "SAMN06461355", "wgs_master": "MZGV00000000.1", "refseq_category": "reference genome", "taxid": "1450648", "species_taxid": "1450648", "organism_name": "Clostridium oryzae", "infraspecific_name": "strain=DSM 28571", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/15", "asm_name": "ASM202923v1", "asm_submitter": "Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_002029235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/029/235/GCF_002029235.1_ASM202923v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5074802", "genome_size_ungapped": "5074802", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "176", "contig_count": "176", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002029235.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "4644", "protein_coding_gene_count": "4477", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-15", "dateModified": "2017-03-15", "datePublished": "2017-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium oryzae" ], "sample_taxid": [ "1450648" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Goshogawara city" ], "sample_host_location_id": [], "data_size": "1.418 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5074802", "Number of Sequences": "176", "Longest Sequences (bp)": "337290", "N50 (bp)": "75803", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.1", "Number of CDSs": "4542", "Average Protein Length": "313.4", "Coding Ratio (%)": "84.2", "Number of rRNAs": "10", "Number of tRNAs": "69", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium oryzae", "strain": "strain=DSM 28571", "accession": "GCA_002029235.1", "taxid": 1450648, "species_taxid": 1450648, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1602, "total_fragments": 1609, 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"matched_fragments": 117, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium polyendosporum", "strain": "strain=JCM 30710", "accession": "GCA_018332455.1", "taxid": 69208, "species_taxid": 69208, "relation_to_type": "type", "validated": true, "ani": 76.4118, "matched_fragments": 78, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium algidicarnis", "strain": "strain=DSM 15099", "accession": "GCA_002934235.1", "taxid": 37659, "species_taxid": 37659, "relation_to_type": "type", "validated": true, "ani": 76.3966, "matched_fragments": 64, "total_fragments": 1609, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium hydrogenum", "strain": "strain=CUEA01", "accession": "GCA_021432385.1", "taxid": 2855764, "species_taxid": 2855764, "relation_to_type": "type", "validated": true, "ani": 76.2898, "matched_fragments": 140, "total_fragments": 1609, 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