{ "type": "genome", "identifier": "GCF_002042885.1", "organism": "Citrobacter portucalensis", "title": "Citrobacter portucalensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Faculty of Pharmacy, University of Porto", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002042885.1", "bioproject": "PRJNA224116", "biosample": "SAMN06214708", "wgs_master": "MVFY00000000.1", "refseq_category": "na", "taxid": "1639133", "species_taxid": "1639133", "organism_name": "Citrobacter portucalensis", "infraspecific_name": "strain=A60", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/20", "asm_name": "ASM204288v1", "asm_submitter": "Faculty of Pharmacy, University of Porto", "gbrs_paired_asm": "GCA_002042885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/885/GCF_002042885.1_ASM204288v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4916306", "genome_size_ungapped": "4916306", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002042885.1-RS_2024_07_09", "annotation_date": "2024-07-09", "total_gene_count": "4697", "protein_coding_gene_count": "4535", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-20", "dateModified": "2017-03-20", "datePublished": "2017-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter portucalensis" ], "sample_taxid": [ "1639133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Taboeira, Cadima, Cantanhede" ], "sample_host_location_id": [], "data_size": "1.403 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4916306", "Number of Sequences": "40", "Longest Sequences (bp)": "556308", "N50 (bp)": "297971", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.0", "Number of CDSs": "4525", "Average Protein Length": "319.7", "Coding Ratio (%)": "88.3", "Number of rRNAs": "5", "Number of tRNAs": "77", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter portucalensis", "strain": "strain=A60", "accession": "GCA_002042885.1", "taxid": 1639133, "species_taxid": 1639133, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_000734905.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 94.6864, "matched_fragments": 1339, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter arsenatis", "strain": "strain=LY-1", "accession": "GCA_004353845.1", "taxid": 2546350, "species_taxid": 2546350, "relation_to_type": "type", "validated": true, "ani": 92.8155, "matched_fragments": 1411, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 82.9472, "matched_fragments": 995, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella 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