{ "type": "genome", "identifier": "GCF_002050515.1", "organism": "Clostridium thermobutyricum DSM 4928", "title": "Clostridium thermobutyricum DSM 4928", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002050515.1", "bioproject": "PRJNA224116", "biosample": "SAMN04516210", "wgs_master": "LTAY00000000.1", "refseq_category": "na", "taxid": "1121339", "species_taxid": "29372", "organism_name": "Clostridium thermobutyricum DSM 4928", "infraspecific_name": "strain=DSM 4928", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/21", "asm_name": "ASM205051v1", "asm_submitter": "Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_002050515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/050/515/GCF_002050515.1_ASM205051v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3397928", "genome_size_ungapped": "3397928", "gc_percent": "26.500000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002050515.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "3352", "protein_coding_gene_count": "3187", "non_coding_gene_count": "135", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-21", "dateModified": "2017-03-21", "datePublished": "2017-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium thermobutyricum DSM 4928" ], "sample_taxid": [ "1121339" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Athens" ], "sample_host_location_id": [], "data_size": "0.909 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3397928", "Number of Sequences": "111", "Longest Sequences (bp)": "260315", "N50 (bp)": "93109", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "26.4", "Number of CDSs": "3194", "Average Protein Length": "298.3", "Coding Ratio (%)": "84.1", "Number of rRNAs": "13", "Number of tRNAs": "88", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium thermobutyricum", "strain": "strain=DSM 4928", "accession": "GCA_002050515.1", "taxid": 29372, "species_taxid": 29372, 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