{ "type": "genome", "identifier": "GCF_002056795.1", "organism": "Spirosoma aerolatum", "title": "Spirosoma aerolatum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002056795.1", "bioproject": "PRJNA224116", "biosample": "SAMN06554014", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1211326", "species_taxid": "1211326", "organism_name": "Spirosoma aerolatum", "infraspecific_name": "strain=KACC 17939", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/21", "asm_name": "ASM205679v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_002056795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/056/795/GCF_002056795.1_ASM205679v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7959595", "genome_size_ungapped": "7959595", "gc_percent": "48.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002056795.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "6704", "protein_coding_gene_count": "6618", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-21", "dateModified": "2017-03-21", "datePublished": "2017-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma aerolatum" ], "sample_taxid": [ "1211326" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Korea: Seoul" ], "sample_host_location_id": [], "data_size": "2.265 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7959595", "Number of Sequences": "1", "Longest Sequences (bp)": "7959595", "N50 (bp)": "7959595", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.3", "Number of CDSs": "6587", "Average Protein Length": "354.2", "Coding Ratio (%)": "87.9", "Number of rRNAs": "6", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma aerolatum", "strain": "strain=KACC 17939", "accession": "GCA_002056795.1", "taxid": 1211326, "species_taxid": 1211326, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2652, "total_fragments": 2653, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 84.3217, "matched_fragments": 2008, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.6682, "matched_fragments": 738, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.6569, "matched_fragments": 589, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 77.6335, "matched_fragments": 646, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.4827, "matched_fragments": 403, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.3931, "matched_fragments": 558, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 77.3777, "matched_fragments": 482, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma terrae", "strain": "strain=KCTC 52035", "accession": "GCA_010435915.1", "taxid": 1968276, "species_taxid": 1968276, "relation_to_type": "type", "validated": true, "ani": 77.0951, "matched_fragments": 484, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 77.0875, "matched_fragments": 342, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 77.069, "matched_fragments": 440, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 77.0633, "matched_fragments": 285, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 77.0073, "matched_fragments": 404, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 76.9842, "matched_fragments": 369, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella humicola", "strain": "strain=MA1", "accession": "GCA_008727875.1", "taxid": 2607654, "species_taxid": 2607654, "relation_to_type": "type", "validated": true, "ani": 76.1276, "matched_fragments": 245, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002056795.1", "gtdb_species": "s__Spirosoma aerolatum", "ani": 100.0, "matched_fragments": 2652, "total_fragments": 2653, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { 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