{ "type": "genome", "identifier": "GCF_002067135.1", "organism": "Spirosoma rigui", "title": "Spirosoma rigui", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002067135.1", "bioproject": "PRJNA224116", "biosample": "SAMN06554015", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "564064", "species_taxid": "564064", "organism_name": "Spirosoma rigui", "infraspecific_name": "strain=KCTC 12531", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/21", "asm_name": "ASM206713v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_002067135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/067/135/GCF_002067135.1_ASM206713v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5828404", "genome_size_ungapped": "5828404", "gc_percent": "54.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002067135.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4775", "protein_coding_gene_count": "4699", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-21", "dateModified": "2017-03-21", "datePublished": "2017-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma rigui" ], "sample_taxid": [ "564064" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Korea:Woopo wetland" ], "sample_host_location_id": [], "data_size": "1.653 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5828404", "Number of Sequences": "1", "Longest Sequences (bp)": "5828404", "N50 (bp)": "5828404", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.4", "Number of CDSs": "4735", "Average Protein Length": "361.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1942, "total_fragments": 1942, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma utsteinense", "strain": "strain=LMG 31447", "accession": "GCA_014282275.1", "taxid": 2585773, "species_taxid": 2585773, "relation_to_type": "type", "validated": true, "ani": 80.3853, "matched_fragments": 1072, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 78.0006, "matched_fragments": 519, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 77.8782, "matched_fragments": 634, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.7803, "matched_fragments": 525, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 77.7438, "matched_fragments": 588, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 77.4044, "matched_fragments": 394, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 77.306, "matched_fragments": 442, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.1264, "matched_fragments": 324, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.0808, "matched_fragments": 338, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 77.0642, "matched_fragments": 399, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter fodinae", "strain": "strain=92R-1", "accession": "GCA_004745825.1", "taxid": 2510796, "species_taxid": 2510796, "relation_to_type": "type", "validated": true, "ani": 75.4635, "matched_fragments": 56, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 75.3201, "matched_fragments": 68, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002067135.1", "gtdb_species": "s__Spirosoma rigui", "ani": 100.0, 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"gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000024525.1", "gtdb_species": "s__Spirosoma linguale", "ani": 77.9333, "matched_fragments": 547, "total_fragments": 1942, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004138325.1", "gtdb_species": "s__Spirosoma sordidisoli", "ani": 77.8793, "matched_fragments": 634, "total_fragments": 1942, "gtdb_taxonomy": 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