{ "type": "genome", "identifier": "GCF_002068095.1", "organism": "Bradyrhizobium sacchari", "title": "Bradyrhizobium sacchari", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Embrapa Agrobiologia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002068095.1", "bioproject": "PRJNA224116", "biosample": "SAMN04849207", "wgs_master": "LWIG00000000.1", "refseq_category": "na", "taxid": "1399419", "species_taxid": "1399419", "organism_name": "Bradyrhizobium sacchari", "infraspecific_name": "strain=p9-20", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/22", "asm_name": "ASM206809v1", "asm_submitter": "Embrapa Agrobiologia", "gbrs_paired_asm": "GCA_002068095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/068/095/GCF_002068095.1_ASM206809v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8698798", "genome_size_ungapped": "8686178", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "69", "contig_count": "69", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002068095.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "8403", "protein_coding_gene_count": "7947", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-22", "dateModified": "2017-03-22", "datePublished": "2017-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium sacchari" ], "sample_taxid": [ "1399419" ], "sample_host_organism": [ "sugarcane cultivar RB867515" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "2.407 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8698798", "Number of Sequences": "69", "Longest Sequences (bp)": "975966", "N50 (bp)": "314112", "Gap Ratio (%)": "0.149193", "GCcontent (%)": "63.8", "Number of CDSs": "8224", "Average Protein Length": "292.5", "Coding Ratio (%)": "83.0", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium sacchari", "strain": "strain=p9-20", "accession": "GCA_002068095.1", "taxid": 1399419, "species_taxid": 1399419, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2849, "total_fragments": 2863, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium huanghuaihaiense", "strain": "strain=CGMCC 1.10948", "accession": "GCA_007830635.1", "taxid": 990078, "species_taxid": 990078, "relation_to_type": "type", "validated": true, "ani": 91.9779, "matched_fragments": 2249, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium stylosanthis", "strain": "strain=BR 446", "accession": "GCA_001641335.1", "taxid": 1803665, "species_taxid": 1803665, "relation_to_type": "type", "validated": true, "ani": 90.4348, "matched_fragments": 2098, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 89.7754, "matched_fragments": 2195, "total_fragments": 2863, 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"below_threshold" }, { "organism_name": "Bradyrhizobium forestalis", "strain": "strain=INPA54B", "accession": "GCA_002795245.1", "taxid": 1419263, "species_taxid": 1419263, "relation_to_type": "type", "validated": true, "ani": 89.1632, "matched_fragments": 2027, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 89.0226, "matched_fragments": 1952, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangxiense", "strain": "strain=CCBAU 53363", "accession": "GCA_004114915.1", "taxid": 1325115, "species_taxid": 1325115, "relation_to_type": "type", "validated": true, "ani": 88.7083, "matched_fragments": 1992, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 88.696, "matched_fragments": 1784, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 88.6913, "matched_fragments": 2021, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 88.6862, "matched_fragments": 1923, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium glycinis", "strain": "strain=CNPSo 4016", "accession": "GCA_016031655.1", "taxid": 2751812, "species_taxid": 2751812, "relation_to_type": "type", "validated": true, "ani": 88.637, "matched_fragments": 1946, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium agreste", "strain": "strain=CNPSo 4010", "accession": "GCA_016031625.1", "taxid": 2751811, "species_taxid": 2751811, "relation_to_type": "type", "validated": true, "ani": 88.6168, "matched_fragments": 1935, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium yuanmingense", "strain": "strain=CCBAU 10071", "accession": "GCA_900094575.1", "taxid": 108015, "species_taxid": 108015, "relation_to_type": "type", "validated": true, "ani": 88.5438, "matched_fragments": 1975, "total_fragments": 2863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", 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