{ "type": "genome", "identifier": "GCF_002071575.1", "organism": "Paraburkholderia tropica", "title": "Paraburkholderia tropica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Embrapa Agrobiologia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002071575.1", "bioproject": "PRJNA224116", "biosample": "SAMN06166932", "wgs_master": "MSDZ00000000.1", "refseq_category": "na", "taxid": "92647", "species_taxid": "92647", "organism_name": "Paraburkholderia tropica", "infraspecific_name": "strain=Ppe8", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/22", "asm_name": "Ppe8", "asm_submitter": "Embrapa Agrobiologia", "gbrs_paired_asm": "GCA_002071575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/071/575/GCF_002071575.1_Ppe8", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8748796", "genome_size_ungapped": "8748410", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002071575.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "7842", "protein_coding_gene_count": "7635", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-22", "dateModified": "2017-03-22", "datePublished": "2017-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia tropica" ], "sample_taxid": [ "92647" ], "sample_host_organism": [ "sugarcane variety SP71-1406" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Pernambuco" ], "sample_host_location_id": [], "data_size": "2.394 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 25.0, "max": 25.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8748796", "Number of Sequences": "71", "Longest Sequences (bp)": "919628", "N50 (bp)": "316959", "Gap Ratio (%)": "0.004423", "GCcontent (%)": "64.7", "Number of CDSs": "7704", "Average Protein Length": "322.1", "Coding Ratio (%)": "85.1", "Number of rRNAs": "18", "Number of tRNAs": "71", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia tropica", "strain": "strain=Ppe8", "accession": "GCA_002071575.1", "taxid": 92647, "species_taxid": 92647, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2870, "total_fragments": 2881, "ani_threshold": 95, 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"Paraburkholderia bannensis", "strain": "strain=NBRC 103871", "accession": "GCA_000685015.1", "taxid": 765414, "species_taxid": 765414, "relation_to_type": "type", "validated": true, "ani": 86.332, "matched_fragments": 1839, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 86.1974, "matched_fragments": 1654, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia oxyphila", "strain": "strain=NBRC 105797", "accession": "GCA_000685075.1", "taxid": 614212, "species_taxid": 614212, "relation_to_type": "type", "validated": true, "ani": 86.0294, "matched_fragments": 1633, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia silviterrae", "strain": 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