{ "type": "genome", "identifier": "GCF_002072105.2", "organism": "Croceivirga radicis", "title": "Croceivirga radicis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002072105.2", "bioproject": "PRJNA224116", "biosample": "SAMN06174226", "wgs_master": "MTBC00000000.1", "refseq_category": "reference genome", "taxid": "1929488", "species_taxid": "1929488", "organism_name": "Croceivirga radicis", "infraspecific_name": "strain=HSG9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Minor", "genome_rep": "Full", "seq_rel_date": "2017/03/23", "asm_name": "ASM207210v2", "asm_submitter": "The Third Institute of State Oceanic Administration", "gbrs_paired_asm": "GCA_002072105.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/072/105/GCF_002072105.2_ASM207210v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3602643", "genome_size_ungapped": "3602643", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002072105.2-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3140", "protein_coding_gene_count": "3077", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-23", "dateModified": "2017-03-23", "datePublished": "2017-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Croceivirga radicis" ], "sample_taxid": [ "1929488" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hainan Province" ], "sample_host_location_id": [], "data_size": "1.011 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3602643", "Number of Sequences": "20", "Longest Sequences (bp)": "652543", "N50 (bp)": "452181", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.1", "Number of CDSs": "3063", "Average Protein Length": "358.2", "Coding Ratio (%)": "91.4", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Croceivirga radicis", "strain": "strain=HSG9", "accession": "GCA_002072105.2", "taxid": 1929488, "species_taxid": 1929488, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1188, "total_fragments": 1190, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Croceivirga lutea", "strain": "strain=CSW06", "accession": "GCA_014235875.1", "taxid": 1775167, "species_taxid": 1775167, "relation_to_type": "type", "validated": true, "ani": 77.9156, "matched_fragments": 244, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceivirga lutea", "strain": "strain=CGMCC 1.15761", "accession": "GCA_014643615.1", "taxid": 1775167, "species_taxid": 1775167, "relation_to_type": "type", "validated": true, "ani": 77.8701, "matched_fragments": 243, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda parva", "strain": "strain=DSM 25885", "accession": "GCA_900215465.1", "taxid": 1247520, "species_taxid": 1247520, "relation_to_type": "type", "validated": true, "ani": 76.9011, "matched_fragments": 146, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga omnivescoria", "strain": "strain=W5C", "accession": "GCA_001999725.1", "taxid": 1888890, "species_taxid": 1888890, "relation_to_type": "type", "validated": true, "ani": 76.7123, "matched_fragments": 173, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda onchidii", "strain": "strain=XY-359", "accession": "GCA_004804315.1", "taxid": 2562684, "species_taxid": 2562684, "relation_to_type": "type", "validated": true, "ani": 76.7058, "matched_fragments": 127, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda zhangzhouensis", "strain": "strain=DSM 25030", "accession": "GCA_900106825.1", "taxid": 1073328, "species_taxid": 1073328, "relation_to_type": "type", "validated": true, "ani": 76.692, "matched_fragments": 163, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter hydrothermalis", "strain": "strain=T28", "accession": "GCA_001673755.1", "taxid": 1836467, "species_taxid": 1836467, "relation_to_type": "type", "validated": true, "ani": 76.6539, "matched_fragments": 163, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter vaceletii", "strain": "strain=DSM 25230", "accession": "GCA_003634105.1", "taxid": 1206816, "species_taxid": 1206816, "relation_to_type": "type", "validated": true, "ani": 76.6111, "matched_fragments": 176, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter hydrothermalis", "strain": "strain=T28", "accession": "GCA_001913155.1", "taxid": 1836467, "species_taxid": 1836467, "relation_to_type": "type", "validated": true, "ani": 76.6063, "matched_fragments": 161, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga lytica", "strain": "strain=DSM 7489", "accession": "GCA_000190595.1", "taxid": 979, "species_taxid": 979, "relation_to_type": "type", "validated": true, "ani": 76.4678, "matched_fragments": 163, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aurantiaca", "strain": "strain=HME9304", "accession": "GCA_003269425.1", "taxid": 1383885, "species_taxid": 1383885, "relation_to_type": "type", "validated": true, "ani": 76.4383, "matched_fragments": 126, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella wandonensis", "strain": "strain=CECT 8445", "accession": "GCA_004346845.1", "taxid": 1442586, "species_taxid": 1442586, "relation_to_type": "type", "validated": true, "ani": 76.4102, "matched_fragments": 65, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella marina", "strain": "strain=DSM 19592", "accession": "GCA_000260115.1", "taxid": 453852, "species_taxid": 453852, "relation_to_type": "type", "validated": true, "ani": 76.3922, "matched_fragments": 104, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga fucicola", "strain": "strain=DSM 24786", "accession": "GCA_900119145.1", "taxid": 76595, "species_taxid": 76595, "relation_to_type": "type", "validated": true, "ani": 76.36, "matched_fragments": 170, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, "relation_to_type": "type", "validated": true, "ani": 76.2924, "matched_fragments": 74, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga tyrosinoxydans", "strain": "strain=DSM 21164", "accession": "GCA_900176415.1", "taxid": 504486, "species_taxid": 504486, "relation_to_type": "type", "validated": true, "ani": 76.2155, "matched_fragments": 138, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 76.1934, "matched_fragments": 64, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina longa", "strain": "strain=SW024", "accession": "GCA_001401755.1", "taxid": 1080221, "species_taxid": 1080221, "relation_to_type": "type", "validated": true, "ani": 76.1016, "matched_fragments": 72, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium filum", "strain": "strain=DSM 17961", "accession": "GCA_000425465.1", "taxid": 370974, "species_taxid": 370974, "relation_to_type": "type", "validated": true, "ani": 76.0715, "matched_fragments": 52, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloflavibacter putidus", "strain": "strain=PLHSN227", "accession": "GCA_006546625.1", "taxid": 2576776, "species_taxid": 2576776, "relation_to_type": "type", "validated": true, "ani": 76.0207, "matched_fragments": 61, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 76.0187, "matched_fragments": 83, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 76.013, "matched_fragments": 75, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002072105.2", "gtdb_species": "s__Croceivirga radicis", "ani": 100.0, "matched_fragments": 1187, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Croceivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_005144745.1", "gtdb_species": "s__Croceivirga sp005144745", "ani": 84.7333, "matched_fragments": 579, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Croceivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014235875.1", "gtdb_species": "s__Croceivirga lutea", "ani": 77.9302, "matched_fragments": 243, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Croceivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003149745.1", "gtdb_species": "s__Muricauda koreensis", "ani": 76.9132, "matched_fragments": 140, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102925.1", "gtdb_species": "s__Muricauda zhangzhouensis", "ani": 76.7417, "matched_fragments": 160, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001999725.1", "gtdb_species": "s__Cellulophaga omnivescoria", "ani": 76.7258, "matched_fragments": 172, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003634105.1", "gtdb_species": "s__Maribacter_B vaceletii", "ani": 76.6111, "matched_fragments": 176, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001913155.1", "gtdb_species": "s__Maribacter hydrothermalis", "ani": 76.5928, "matched_fragments": 162, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002813425.1", "gtdb_species": "s__Cellulophaga sp002813425", "ani": 76.5492, "matched_fragments": 173, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008040165.1", "gtdb_species": "s__Muricauda hymeniacidonis", "ani": 76.4902, "matched_fragments": 150, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000190595.1", "gtdb_species": "s__Cellulophaga lytica", "ani": 76.4894, "matched_fragments": 161, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_013001145.1", "gtdb_species": "s__Croceitalea sp013001145", "ani": 76.4875, "matched_fragments": 113, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Croceitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_004346845.1", "gtdb_species": "s__Winogradskyella wandonensis", "ani": 76.3807, "matched_fragments": 66, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900119145.1", "gtdb_species": "s__Cellulophaga fucicola", "ani": 76.36, "matched_fragments": 170, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009797025.1", "gtdb_species": "s__Cellulophaga sp009797025", "ani": 76.2166, "matched_fragments": 158, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018860745.1", "gtdb_species": "s__Zobellia uliginosa_B", "ani": 76.1875, "matched_fragments": 134, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Zobellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000425465.1", "gtdb_species": "s__Flavobacterium filum", "ani": 76.0715, "matched_fragments": 52, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008056315.1", "gtdb_species": "s__Seonamhaeicola maritimus", "ani": 76.0187, "matched_fragments": 83, "total_fragments": 1190, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Croceivirga", "radicis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }