{
    "type": "genome",
    "identifier": "GCF_002072215.1",
    "organism": "Methanobrevibacter arboriphilus JCM 13429 = DSM 1125",
    "title": "Methanobrevibacter arboriphilus JCM 13429 = DSM 1125",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002072215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03267482",
        "wgs_master": "JXMW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1300164",
        "species_taxid": "39441",
        "organism_name": "Methanobrevibacter arboriphilus JCM 13429 = DSM 1125",
        "infraspecific_name": "strain=DH1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/24",
        "asm_name": "ASM207221v1",
        "asm_submitter": "Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "GCA_002072215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/072/215/GCF_002072215.1_ASM207221v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2445031",
        "genome_size_ungapped": "2445031",
        "gc_percent": "25.500000",
        "replicon_count": "0",
        "scaffold_count": "40",
        "contig_count": "40",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002072215.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "2007",
        "protein_coding_gene_count": "1944",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-24",
    "dateModified": "2017-03-24",
    "datePublished": "2017-03-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanobrevibacter arboriphilus JCM 13429 = DSM 1125"
        ],
        "sample_taxid": [
            "1300164"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison"
        ],
        "sample_host_location_id": [],
        "data_size": "0.651 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2445031",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "374571",
        "N50 (bp)": "111976",
        "Gap Ratio (%)": "0.000082",
        "GCcontent (%)": "25.4",
        "Number of CDSs": "1978",
        "Average Protein Length": "301.4",
        "Coding Ratio (%)": "73.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methanobrevibacter arboriphilus",
                "strain": "strain=DH1",
                "accession": "GCA_002072215.1",
                "taxid": 39441,
                "species_taxid": 39441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 794,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanobrevibacter arboriphilus",
                "strain": "strain=JCM 13429",
                "accession": "GCA_001316345.1",
                "taxid": 39441,
                "species_taxid": 39441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.4435,
                "matched_fragments": 543,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanobrevibacter cuticularis",
                "strain": "strain=DSM 11139",
                "accession": "GCA_001639285.1",
                "taxid": 47311,
                "species_taxid": 47311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2981,
                "matched_fragments": 336,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanobrevibacter filiformis",
                "strain": "strain=DSM 11501",
                "accession": "GCA_001639265.1",
                "taxid": 55758,
                "species_taxid": 55758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9978,
                "matched_fragments": 231,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanobrevibacter woesei",
                "strain": "strain=DSM 11979",
                "accession": "GCA_003111605.1",
                "taxid": 190976,
                "species_taxid": 190976,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3799,
                "matched_fragments": 156,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanobrevibacter gottschalkii",
                "strain": "strain=DSM 11977",
                "accession": "GCA_003814835.1",
                "taxid": 190974,
                "species_taxid": 190974,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2403,
                "matched_fragments": 136,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002072215.1",
                "gtdb_species": "s__Methanobrevibacter_C arboriphilus",
                "ani": 100.0,
                "matched_fragments": 794,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.72",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000513315.1",
                "gtdb_species": "s__Methanobrevibacter_C arboriphilus_A",
                "ani": 94.385,
                "matched_fragments": 653,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "97.35",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003315655.1",
                "gtdb_species": "s__Methanobrevibacter_C sp003315655",
                "ani": 80.3256,
                "matched_fragments": 407,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009784145.1",
                "gtdb_species": "s__Methanobrevibacter_C sp009784145",
                "ani": 79.3148,
                "matched_fragments": 258,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001639285.1",
                "gtdb_species": "s__Methanobrevibacter_C cuticularis",
                "ani": 78.3663,
                "matched_fragments": 331,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009776495.1",
                "gtdb_species": "s__Methanobrevibacter_C sp009776495",
                "ani": 77.5535,
                "matched_fragments": 156,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009777005.1",
                "gtdb_species": "s__Methanobrevibacter_C sp009777005",
                "ani": 77.1704,
                "matched_fragments": 285,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.431,
        "doubling_h": 1.113,
        "growth_tmp": 37.0,
        "optimum_tmp": 33.5,
        "optimum_ph": 7.75,
        "genome_size": 2266864.75,
        "gc_content": 30.616,
        "coding_genes": 1977.708,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 39.916,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanobrevibacter",
        "arboriphilus",
        "JCM",
        "13429",
        "=",
        "DSM",
        "1125"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}