{ "type": "genome", "identifier": "GCF_002075345.1", "organism": "Citrobacter braakii", "title": "Citrobacter braakii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Faculty of Pharmacy, University of Porto", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002075345.1", "bioproject": "PRJNA224116", "biosample": "SAMN06219870", "wgs_master": "NAEW00000000.1", "refseq_category": "na", "taxid": "57706", "species_taxid": "57706", "organism_name": "Citrobacter braakii", "infraspecific_name": "strain=ATCC 51113", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/30", "asm_name": "ASM207534v1", "asm_submitter": "Faculty of Pharmacy, University of Porto", "gbrs_paired_asm": "GCA_002075345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/075/345/GCF_002075345.1_ASM207534v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5575578", "genome_size_ungapped": "5575578", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "107", "contig_count": "107", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002075345.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "5501", "protein_coding_gene_count": "5228", "non_coding_gene_count": "109", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-30", "dateModified": "2017-03-30", "datePublished": "2017-03-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter braakii" ], "sample_taxid": [ "57706" ], "sample_host_organism": [ "snake" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.591 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5575578", "Number of Sequences": "107", "Longest Sequences (bp)": "837849", "N50 (bp)": "428070", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.9", "Number of CDSs": "5268", "Average Protein Length": "306.6", "Coding Ratio (%)": "86.9", "Number of rRNAs": "10", "Number of tRNAs": "85", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter braakii", "strain": "strain=ATCC 51113", "accession": "GCA_002075345.1", "taxid": 57706, "species_taxid": 57706, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1807, "total_fragments": 1812, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Citrobacter braakii", "strain": "strain=FDAARGOS 1421", "accession": "GCA_019048805.1", "taxid": 57706, "species_taxid": 57706, "relation_to_type": "type", "validated": true, "ani": 99.9963, "matched_fragments": 1788, "total_fragments": 1812, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Citrobacter europaeus", "strain": "strain=97/79", "accession": "GCA_900079995.3", "taxid": 1914243, "species_taxid": 1914243, "relation_to_type": "type", "validated": true, "ani": 93.3633, "matched_fragments": 1390, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter arsenatis", "strain": "strain=LY-1", "accession": "GCA_004353845.1", "taxid": 2546350, "species_taxid": 2546350, "relation_to_type": "type", "validated": true, "ani": 93.0231, "matched_fragments": 1402, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter portucalensis", "strain": "strain=A60", "accession": "GCA_002042885.1", "taxid": 1639133, "species_taxid": 1639133, "relation_to_type": "type", "validated": true, "ani": 92.5484, "matched_fragments": 1322, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=NBRC 12681", "accession": "GCA_000759735.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 92.3745, "matched_fragments": 1341, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_011064845.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 92.361, "matched_fragments": 1347, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter pasteurii", "strain": "strain=FDAARGOS 1424", "accession": "GCA_019047765.1", "taxid": 1563222, "species_taxid": 1563222, "relation_to_type": "type", "validated": true, "ani": 89.9983, "matched_fragments": 1276, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 82.851, "matched_fragments": 1043, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", "accession": "GCA_022869965.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "suspected-type", "validated": true, "ani": 82.8086, "matched_fragments": 991, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Citrobacter", "braakii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }