{ "type": "genome", "identifier": "GCF_002075885.1", "organism": "Pseudaminobacter manganicus", "title": "Pseudaminobacter manganicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002075885.1", "bioproject": "PRJNA224116", "biosample": "SAMN05526244", "wgs_master": "MDET00000000.1", "refseq_category": "reference genome", "taxid": "1873176", "species_taxid": "1873176", "organism_name": "Pseudaminobacter manganicus", "infraspecific_name": "strain=JH-7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/31", "asm_name": "ASM207588v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_002075885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/075/885/GCF_002075885.1_ASM207588v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4842937", "genome_size_ungapped": "4842937", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002075885.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "4764", "protein_coding_gene_count": "4568", "non_coding_gene_count": "72", "pubmed_id": "28036252" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-31", "dateModified": "2017-03-31", "datePublished": "2017-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudaminobacter manganicus" ], "sample_taxid": [ "1873176" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou Province" ], "sample_host_location_id": [], "data_size": "1.357 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4842937", "Number of Sequences": "60", "Longest Sequences (bp)": "444792", "N50 (bp)": "152861", "Gap Ratio (%)": "0.000165", "GCcontent (%)": "61.2", "Number of CDSs": "4674", "Average Protein Length": "303.0", "Coding Ratio (%)": "87.7", "Number of rRNAs": "12", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 80.7395, 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"below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 79.85, "matched_fragments": 788, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 79.8244, "matched_fragments": 736, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sophorae", "strain": "strain=ICMP 19535", "accession": "GCA_002270415.1", "taxid": 1300294, "species_taxid": 1300294, "relation_to_type": "type", "validated": true, "ani": 79.8128, "matched_fragments": 732, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=DSM 2626", "accession": "GCA_003148495.1", "taxid": 381, "species_taxid": 381, "relation_to_type": "suspected-type", "validated": true, "ani": 79.78, "matched_fragments": 737, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 79.7481, "matched_fragments": 751, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium erdmanii", "strain": "strain=USDA 3471", "accession": "GCA_000472705.1", "taxid": 1777866, "species_taxid": 1777866, "relation_to_type": "type", "validated": true, "ani": 79.7281, "matched_fragments": 744, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium silamurunense", "strain": "strain=CCBAU 01550", "accession": "GCA_014843825.1", "taxid": 499528, "species_taxid": 499528, "relation_to_type": "type", "validated": true, "ani": 79.7066, "matched_fragments": 707, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 79.6883, "matched_fragments": 721, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquamicrobium defluvii", "strain": "strain=DSM 11603", "accession": "GCA_004363725.1", "taxid": 69279, "species_taxid": 69279, "relation_to_type": "type", "validated": true, "ani": 79.5925, "matched_fragments": 590, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium zhangyense", "strain": "strain=CGMCC 1.15528", "accession": "GCA_011045115.1", "taxid": 1776730, 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