{ "type": "genome", "identifier": "GCF_002077695.1", "organism": "Pantoea latae", "title": "Pantoea latae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Central Florida", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002077695.1", "bioproject": "PRJNA224116", "biosample": "SAMN06446882", "wgs_master": "MWUE00000000.1", "refseq_category": "reference genome", "taxid": "1964541", "species_taxid": "1964541", "organism_name": "Pantoea latae", "infraspecific_name": "strain=AS1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/03", "asm_name": "ASM207769v1", "asm_submitter": "University of Central Florida", "gbrs_paired_asm": "GCA_002077695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/077/695/GCF_002077695.1_ASM207769v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4960415", "genome_size_ungapped": "4960415", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002077695.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4729", "protein_coding_gene_count": "4577", "non_coding_gene_count": "110", "pubmed_id": "28705985" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-03", "dateModified": "2017-04-03", "datePublished": "2017-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pantoea latae" ], "sample_taxid": [ "1964541" ], "sample_host_organism": [ "Zamia integrifolia" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Central Florida" ], "sample_host_location_id": [], "data_size": "1.384 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4960415", "Number of Sequences": "83", "Longest Sequences (bp)": "376349", "N50 (bp)": "204505", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "4600", "Average Protein Length": "315.3", "Coding Ratio (%)": "87.7", "Number of rRNAs": "0", "Number of tRNAs": "80", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pantoea latae", "strain": "strain=AS1", "accession": "GCA_002077695.1", "taxid": 1964541, "species_taxid": 1964541, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1624, "total_fragments": 1625, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pantoea septica", "strain": "strain=LMG 5345", "accession": "GCA_002095575.1", "taxid": 472695, "species_taxid": 472695, "relation_to_type": "type", "validated": true, "ani": 90.8108, "matched_fragments": 1174, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea dispersa", "strain": "strain=DSM 30073", "accession": "GCA_014155765.1", "taxid": 59814, "species_taxid": 59814, "relation_to_type": "type", "validated": true, "ani": 82.9423, "matched_fragments": 1023, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea dispersa", "strain": "strain=CCUG 25232T", "accession": "GCA_008692915.1", "taxid": 59814, "species_taxid": 59814, "relation_to_type": "type", "validated": true, "ani": 82.9208, "matched_fragments": 1014, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea 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95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 79.0997, "matched_fragments": 600, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002077695.1", "gtdb_species": "s__Pantoea latae", "ani": 100.0, "matched_fragments": 1624, "total_fragments": 1625, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002095575.1", "gtdb_species": 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