{ "type": "genome", "identifier": "GCF_002077935.1", "organism": "Niastella yeongjuensis", "title": "Niastella yeongjuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huzhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002077935.1", "bioproject": "PRJNA224116", "biosample": "SAMN04601196", "wgs_master": "LVXG00000000.1", "refseq_category": "na", "taxid": "354355", "species_taxid": "354355", "organism_name": "Niastella yeongjuensis", "infraspecific_name": "strain=DSM 17621", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/03", "asm_name": "ASM207793v1", "asm_submitter": "Huzhong Agricultural University", "gbrs_paired_asm": "GCA_002077935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/077/935/GCF_002077935.1_ASM207793v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8532384", "genome_size_ungapped": "8532384", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002077935.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "6849", "protein_coding_gene_count": "6765", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-03", "dateModified": "2017-04-03", "datePublished": "2017-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Niastella yeongjuensis DSM 17621" ], "sample_taxid": [ "1122606" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "2.421 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8532384", "Number of Sequences": "82", "Longest Sequences (bp)": "1015625", "N50 (bp)": "505924", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.5", "Number of CDSs": "6732", "Average Protein Length": "366.9", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_002077935.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2806, "total_fragments": 2807, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 99.9932, "matched_fragments": 2804, "total_fragments": 2807, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Niastella koreensis", "strain": "strain=GR20-10", "accession": "GCA_000246855.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 85.0314, "matched_fragments": 1886, "total_fragments": 2807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 85.0026, "matched_fragments": 1889, "total_fragments": 2807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella soli", "strain": "strain=MAH-29", "accession": "GCA_017742245.1", "taxid": 2821487, "species_taxid": 2821487, "relation_to_type": "type", "validated": true, "ani": 84.2884, "matched_fragments": 1940, "total_fragments": 2807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella pedocola", "strain": "strain=JCM 31011", "accession": "GCA_021044425.1", "taxid": 1752077, "species_taxid": 1752077, "relation_to_type": "type", "validated": true, "ani": 76.1868, "matched_fragments": 79, "total_fragments": 2807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 76.0736, "matched_fragments": 90, "total_fragments": 2807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella hibiscisoli", "strain": "strain=THG-DN5.5", "accession": "GCA_022512515.1", "taxid": 1825928, "species_taxid": 1825928, "relation_to_type": "type", "validated": true, "ani": 76.0155, "matched_fragments": 66, "total_fragments": 2807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", "validated": true, "ani": 75.8934, "matched_fragments": 70, "total_fragments": 2807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 75.8285, "matched_fragments": 94, "total_fragments": 2807, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900110245.1", 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002078015.1", "gtdb_species": "s__Niastella populi", "ani": 80.5123, "matched_fragments": 1292, "total_fragments": 2807, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 1.0, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 31.5, "optimum_ph": 7.0, "genome_size": 8546563.0, "gc_content": 44.95, "coding_genes": 7160.333, "rRNA16S_genes": 3.0, "tRNA_genes": 55.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Niastella", "yeongjuensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }