{ "type": "genome", "identifier": "GCF_002077945.1", "organism": "Niastella vici", "title": "Niastella vici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huzhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002077945.1", "bioproject": "PRJNA224116", "biosample": "SAMN04590022", "wgs_master": "LVYD00000000.1", "refseq_category": "reference genome", "taxid": "1703345", "species_taxid": "1703345", "organism_name": "Niastella vici", "infraspecific_name": "strain=DJ57", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/03", "asm_name": "ASM207794v1", "asm_submitter": "Huzhong Agricultural University", "gbrs_paired_asm": "GCA_002077945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/077/945/GCF_002077945.1_ASM207794v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10058349", "genome_size_ungapped": "10058349", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "134", "contig_count": "134", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002077945.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "7954", "protein_coding_gene_count": "7857", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-03", "dateModified": "2017-04-03", "datePublished": "2017-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Niastella vici" ], "sample_taxid": [ "1703345" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hunan Linxiang" ], "sample_host_location_id": [], "data_size": "2.849 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10058349", "Number of Sequences": "134", "Longest Sequences (bp)": "819643", "N50 (bp)": "357565", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.5", "Number of CDSs": "7705", "Average Protein Length": "371.4", "Coding Ratio (%)": "85.4", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Niastella vici", "strain": "strain=DJ57", "accession": "GCA_002077945.1", "taxid": 1703345, "species_taxid": 1703345, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3296, "total_fragments": 3300, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Niastella caeni", "strain": "strain=HX-16-21", "accession": "GCA_004834005.1", "taxid": 2569763, "species_taxid": 2569763, "relation_to_type": "type", "validated": true, "ani": 82.1369, "matched_fragments": 1672, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella populi", "strain": "strain=CCTCC AB 208238", "accession": "GCA_002078015.1", "taxid": 550983, "species_taxid": 550983, "relation_to_type": "type", "validated": true, "ani": 81.3406, "matched_fragments": 1530, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_002077935.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 81.1091, "matched_fragments": 1388, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 81.0604, "matched_fragments": 1403, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=GR20-10", "accession": "GCA_000246855.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 81.0069, "matched_fragments": 1597, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 80.9968, "matched_fragments": 1601, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella soli", "strain": "strain=MAH-29", "accession": "GCA_017742245.1", "taxid": 2821487, "species_taxid": 2821487, "relation_to_type": "type", "validated": true, "ani": 80.9224, "matched_fragments": 1458, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pinibacter aurantiacus", "strain": "strain=MAH-26", "accession": "GCA_019130065.1", "taxid": 2851599, "species_taxid": 2851599, "relation_to_type": "type", "validated": true, "ani": 76.1916, "matched_fragments": 110, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 75.9039, "matched_fragments": 100, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas effusa", "strain": "strain=TTM-71", "accession": "GCA_004118675.1", "taxid": 2508721, "species_taxid": 2508721, "relation_to_type": "type", "validated": true, "ani": 75.8913, "matched_fragments": 106, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella pedocola", "strain": "strain=JCM 31011", "accession": "GCA_021044425.1", "taxid": 1752077, "species_taxid": 1752077, "relation_to_type": "type", "validated": true, "ani": 75.8037, "matched_fragments": 96, "total_fragments": 3300, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002077945.1", "gtdb_species": "s__Niastella vici", "ani": 100.0, "matched_fragments": 3296, "total_fragments": 3300, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004834005.1", "gtdb_species": "s__Niastella caeni", "ani": 82.1531, "matched_fragments": 1667, "total_fragments": 3300, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004341975.1", "gtdb_species": "s__Niastella sp004341975", "ani": 81.4097, "matched_fragments": 1692, "total_fragments": 3300, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002078015.1", "gtdb_species": "s__Niastella populi", "ani": 81.3449, "matched_fragments": 1529, "total_fragments": 3300, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016924755.1", "gtdb_species": "s__Niastella sp016924755", "ani": 81.2436, "matched_fragments": 1376, "total_fragments": 3300, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017356035.1", 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81.0031, "matched_fragments": 1597, "total_fragments": 3300, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017742245.1", "gtdb_species": "s__Niastella sp017742245", "ani": 80.9154, "matched_fragments": 1460, "total_fragments": 3300, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.42, "cell_length": 1.026, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 31.666, "optimum_ph": 6.916, "genome_size": 8790123.1, "gc_content": 44.95, "coding_genes": 7160.333, "rRNA16S_genes": 3.0, "tRNA_genes": 55.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Niastella", "vici" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }