{ "type": "genome", "identifier": "GCF_002078015.1", "organism": "Niastella populi", "title": "Niastella populi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huzhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002078015.1", "bioproject": "PRJNA224116", "biosample": "SAMN04601197", "wgs_master": "LWBP00000000.1", "refseq_category": "reference genome", "taxid": "550983", "species_taxid": "550983", "organism_name": "Niastella populi", "infraspecific_name": "strain=CCTCC AB 208238", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/03", "asm_name": "ASM207801v1", "asm_submitter": "Huzhong Agricultural University", "gbrs_paired_asm": "GCA_002078015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/078/015/GCF_002078015.1_ASM207801v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8612932", "genome_size_ungapped": "8612932", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "264", "contig_count": "264", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002078015.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "6754", "protein_coding_gene_count": "6645", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-03", "dateModified": "2017-04-03", "datePublished": "2017-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Niastella populi" ], "sample_taxid": [ "550983" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.445 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8612932", "Number of Sequences": "264", "Longest Sequences (bp)": "602354", "N50 (bp)": "157221", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.4", "Number of CDSs": "6387", "Average Protein Length": "367.1", "Coding Ratio (%)": "81.7", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Niastella populi", "strain": "strain=CCTCC AB 208238", "accession": "GCA_002078015.1", "taxid": 550983, "species_taxid": 550983, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2761, "total_fragments": 2768, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Niastella vici", "strain": "strain=DJ57", "accession": "GCA_002077945.1", "taxid": 1703345, "species_taxid": 1703345, "relation_to_type": "type", "validated": true, "ani": 81.33, "matched_fragments": 1516, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella caeni", "strain": "strain=HX-16-21", "accession": "GCA_004834005.1", "taxid": 2569763, "species_taxid": 2569763, "relation_to_type": "type", "validated": true, "ani": 81.1234, "matched_fragments": 1416, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_002077935.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 80.4854, "matched_fragments": 1290, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 80.4727, "matched_fragments": 1290, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=GR20-10", "accession": "GCA_000246855.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 80.3175, "matched_fragments": 1384, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 80.2818, "matched_fragments": 1383, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella soli", "strain": "strain=MAH-29", "accession": "GCA_017742245.1", "taxid": 2821487, "species_taxid": 2821487, "relation_to_type": "type", "validated": true, "ani": 80.1986, "matched_fragments": 1313, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pinibacter aurantiacus", "strain": "strain=MAH-26", "accession": "GCA_019130065.1", "taxid": 2851599, "species_taxid": 2851599, "relation_to_type": "type", "validated": true, "ani": 76.3179, "matched_fragments": 109, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas effusa", "strain": "strain=TTM-71", "accession": "GCA_004118675.1", "taxid": 2508721, "species_taxid": 2508721, "relation_to_type": "type", "validated": true, "ani": 75.9372, "matched_fragments": 102, "total_fragments": 2768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017356035.1", "gtdb_species": "s__Niastella sp017356035", "ani": 80.7398, "matched_fragments": 1363, "total_fragments": 2768, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110245.1", "gtdb_species": "s__Niastella yeongjuensis", "ani": 80.4727, "matched_fragments": 1290, "total_fragments": 2768, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017306865.1", "gtdb_species": "s__JAFKHH01 sp017306865", "ani": 75.8847, "matched_fragments": 89, "total_fragments": 2768, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JAFKHH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.561, "cell_length": 1.079, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 8790123.1, "gc_content": 44.95, "coding_genes": 7160.333, "rRNA16S_genes": 3.0, "tRNA_genes": 55.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Niastella", "populi" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }