{ "type": "genome", "identifier": "GCF_002078505.1", "organism": "Ensifer aridi", "title": "Ensifer aridi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dr. Antoine Le Quere", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002078505.1", "bioproject": "PRJNA224116", "biosample": "SAMN04455909", "wgs_master": "LUAV00000000.1", "refseq_category": "reference genome", "taxid": "1708715", "species_taxid": "1708715", "organism_name": "Ensifer aridi", "infraspecific_name": "strain=LMR001", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/04", "asm_name": "ASM207850v1", "asm_submitter": "Dr. Antoine Le Quere", "gbrs_paired_asm": "GCA_002078505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/078/505/GCF_002078505.1_ASM207850v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6609808", "genome_size_ungapped": "6601395", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002078505.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6264", "protein_coding_gene_count": "5968", "non_coding_gene_count": "57", "pubmed_id": "28088165" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-04", "dateModified": "2017-04-04", "datePublished": "2017-04-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Ensifer aridi" ], "sample_taxid": [ "1708715" ], "sample_host_organism": [ "Vachellia gummifera" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Morocco: Merzouga desert" ], 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"status": "below_threshold" }, { "organism_name": "Sinorhizobium kostiense", "strain": "strain=DSM 13372", "accession": "GCA_017874595.1", "taxid": 76747, "species_taxid": 76747, "relation_to_type": "type", "validated": true, "ani": 84.5009, "matched_fragments": 1399, "total_fragments": 2170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA 205", "accession": "GCA_001461695.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 84.0988, "matched_fragments": 1367, "total_fragments": 2170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=NBRC 14780", "accession": "GCA_006539605.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 84.092, "matched_fragments": 1341, "total_fragments": 2170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium 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"taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 83.8935, "matched_fragments": 1375, "total_fragments": 2170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_000261485.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 83.0257, "matched_fragments": 1195, "total_fragments": 2170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_002288525.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 83.0173, "matched_fragments": 1247, "total_fragments": 2170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer alkalisoli", "strain": "strain=YIC4027", "accession": "GCA_008932245.1", "taxid": 1752398, "species_taxid": 1752398, "relation_to_type": "type", 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"below_threshold" }, { "organism_name": "Neorhizobium lilium", "strain": "strain=24NR", "accession": "GCA_004053875.1", "taxid": 2503024, "species_taxid": 2503024, "relation_to_type": "type", "validated": true, "ani": 78.2954, "matched_fragments": 474, "total_fragments": 2170, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002078505.1", "gtdb_species": "s__Sinorhizobium aridi", "ani": 100.0, "matched_fragments": 2170, "total_fragments": 2170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Sinorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_000513895.1", "gtdb_species": "s__Sinorhizobium 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