{ "tc_result": [ { "organism_name": "Sphingobium herbicidovorans", "strain": "strain=MH", "accession": "GCA_002080435.1", "taxid": 76947, "species_taxid": 76947, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1398, "total_fragments": 1412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobium herbicidovorans", "strain": "strain=NBRC 16415", "accession": "GCA_000632125.2", "taxid": 76947, "species_taxid": 76947, "relation_to_type": "type", "validated": true, "ani": 99.963, "matched_fragments": 1314, "total_fragments": 1412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobium herbicidovorans", "strain": "strain=NBRC 16415", "accession": "GCA_001598535.1", "taxid": 76947, "species_taxid": 76947, "relation_to_type": "type", "validated": true, "ani": 99.9532, "matched_fragments": 1316, "total_fragments": 1412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobium chungbukense", "strain": "strain=DJ77", "accession": "GCA_001005725.1", "taxid": 56193, "species_taxid": 56193, "relation_to_type": "type", "validated": true, "ani": 83.4523, "matched_fragments": 737, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium quisquiliarum", "strain": "strain=P25", "accession": "GCA_000445065.1", "taxid": 538379, "species_taxid": 538379, "relation_to_type": "type", "validated": true, "ani": 83.1752, "matched_fragments": 716, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium chlorophenolicum", "strain": "strain=NBRC 16172", "accession": "GCA_000722875.1", "taxid": 46429, "species_taxid": 46429, "relation_to_type": "type", "validated": true, "ani": 82.9509, "matched_fragments": 683, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium estronivorans", "strain": "strain=AXB", "accession": "GCA_008692605.1", "taxid": 1577690, "species_taxid": 1577690, "relation_to_type": "type", "validated": true, "ani": 82.7684, "matched_fragments": 705, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium vermicomposti", "strain": "strain=DSM 21299", "accession": "GCA_011762025.1", "taxid": 529005, "species_taxid": 529005, "relation_to_type": "type", "validated": true, "ani": 82.3474, "matched_fragments": 724, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium ummariense", "strain": "strain=RL-3", "accession": "GCA_000447205.1", "taxid": 420994, "species_taxid": 420994, "relation_to_type": "type", "validated": true, "ani": 81.8374, "matched_fragments": 618, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panni", "strain": "strain=DSM 15761", "accession": "GCA_022664435.1", "taxid": 237612, "species_taxid": 237612, "relation_to_type": "type", "validated": true, "ani": 78.496, "matched_fragments": 301, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 78.2227, "matched_fragments": 291, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hylomeconis", "strain": "strain=CCTCC AB 2013304", "accession": "GCA_025370105.1", "taxid": 1395958, "species_taxid": 1395958, "relation_to_type": "type", "validated": true, "ani": 77.6878, "matched_fragments": 246, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 77.6768, "matched_fragments": 254, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 77.2253, "matched_fragments": 290, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002080435.1", "gtdb_species": "s__Sphingobium herbicidovorans", "ani": 100.0, "matched_fragments": 1401, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001563285.1", "gtdb_species": "s__Sphingobium sp001563285", "ani": 91.9389, "matched_fragments": 906, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001658005.1", "gtdb_species": "s__Sphingobium sp001658005", "ani": 84.5838, "matched_fragments": 861, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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1, "status": "-" }, { "accession": "GCF_001005725.1", "gtdb_species": "s__Sphingobium chungbukense", "ani": 83.4555, "matched_fragments": 737, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.77", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.72", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000445065.1", "gtdb_species": "s__Sphingobium quisquiliarum", "ani": 83.1712, "matched_fragments": 712, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001563265.1", "gtdb_species": "s__Sphingobium sp001563265", "ani": 83.0466, "matched_fragments": 752, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.68", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000722875.1", "gtdb_species": "s__Sphingobium chlorophenolicum", "ani": 82.9673, "matched_fragments": 682, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "95.89", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.76", "num_clustered_genomes": 3, "status": "-" }, { 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"GCF_004361945.1", "gtdb_species": "s__Sphingobium barthaii_A", "ani": 81.9433, "matched_fragments": 653, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000447205.1", "gtdb_species": "s__Sphingobium ummariense", "ani": 81.8399, "matched_fragments": 621, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }