{ "type": "genome", "identifier": "GCF_002080435.1", "organism": "Sphingobium herbicidovorans", "title": "Sphingobium herbicidovorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Aarhus University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002080435.1", "bioproject": "PRJNA224116", "biosample": "SAMN06647797", "wgs_master": "na", "refseq_category": "na", "taxid": "76947", "species_taxid": "76947", "organism_name": "Sphingobium herbicidovorans", "infraspecific_name": "strain=MH", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/06", "asm_name": "ASM208043v1", "asm_submitter": "Aarhus University", "gbrs_paired_asm": "GCA_002080435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/080/435/GCF_002080435.1_ASM208043v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4240798", "genome_size_ungapped": "4240798", "gc_percent": "62.500000", "replicon_count": "5", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002080435.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "4213", "protein_coding_gene_count": "3995", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-06", "dateModified": "2017-04-06", "datePublished": "2017-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobium herbicidovorans" ], "sample_taxid": [ "76947" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "1.177 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4240798", "Number of Sequences": "5", "Longest Sequences (bp)": "2919834", "N50 (bp)": "2919834", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "4161", "Average Protein Length": "303.5", "Coding Ratio (%)": "89.3", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobium herbicidovorans", "strain": "strain=MH", "accession": "GCA_002080435.1", "taxid": 76947, "species_taxid": 76947, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1398, "total_fragments": 1412, "ani_threshold": 95, 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"accession": "GCA_011762025.1", "taxid": 529005, "species_taxid": 529005, "relation_to_type": "type", "validated": true, "ani": 82.3474, "matched_fragments": 724, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium ummariense", "strain": "strain=RL-3", "accession": "GCA_000447205.1", "taxid": 420994, "species_taxid": 420994, "relation_to_type": "type", "validated": true, "ani": 81.8374, "matched_fragments": 618, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panni", "strain": "strain=DSM 15761", "accession": "GCA_022664435.1", "taxid": 237612, "species_taxid": 237612, "relation_to_type": "type", "validated": true, "ani": 78.496, "matched_fragments": 301, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, 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