{
    "type": "genome",
    "identifier": "GCF_002080475.1",
    "organism": "Clostridium formicaceticum",
    "title": "Clostridium formicaceticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002080475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06660676",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1497",
        "species_taxid": "1497",
        "organism_name": "Clostridium formicaceticum",
        "infraspecific_name": "strain=DSM 92",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/04/06",
        "asm_name": "ASM208047v1",
        "asm_submitter": "Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "GCA_002080475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/080/475/GCF_002080475.1_ASM208047v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4586728",
        "genome_size_ungapped": "4586728",
        "gc_percent": "35.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002080475.1-RS_2024_04_12",
        "annotation_date": "2024-04-12",
        "total_gene_count": "4354",
        "protein_coding_gene_count": "4139",
        "non_coding_gene_count": "172",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-04-06",
    "dateModified": "2017-04-06",
    "datePublished": "2017-04-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium formicaceticum"
        ],
        "sample_taxid": [
            "1497"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Goettingen"
        ],
        "sample_host_location_id": [],
        "data_size": "1.266 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4586728",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4586728",
        "N50 (bp)": "4586728",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.5",
        "Number of CDSs": "4239",
        "Average Protein Length": "306.3",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "33",
        "Number of tRNAs": "134",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridium formicaceticum",
                "strain": "strain=DSM 92",
                "accession": "GCA_002080475.1",
                "taxid": 1497,
                "species_taxid": 1497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1528,
                "total_fragments": 1528,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Clostridium formicaceticum",
                "strain": "strain=ATCC 27076",
                "accession": "GCA_001854185.1",
                "taxid": 1497,
                "species_taxid": 1497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9972,
                "matched_fragments": 1528,
                "total_fragments": 1528,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Clostridium aceticum",
                "strain": "strain=DSM 1496",
                "accession": "GCA_001042715.1",
                "taxid": 84022,
                "species_taxid": 84022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9499,
                "matched_fragments": 914,
                "total_fragments": 1528,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium aceticum",
                "strain": "strain=DSM 1496",
                "accession": "GCA_000949285.1",
                "taxid": 84022,
                "species_taxid": 84022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7769,
                "matched_fragments": 893,
                "total_fragments": 1528,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerovirgula multivorans",
                "strain": "strain=SCA",
                "accession": "GCA_900188145.1",
                "taxid": 312168,
                "species_taxid": 312168,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7162,
                "matched_fragments": 436,
                "total_fragments": 1528,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronincola ferrireducens",
                "strain": "strain=DSM 18346",
                "accession": "GCA_900100845.1",
                "taxid": 393762,
                "species_taxid": 393762,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1121,
                "matched_fragments": 288,
                "total_fragments": 1528,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronincola peptidivorans",
                "strain": "strain=DSM 18979",
                "accession": "GCA_900111615.1",
                "taxid": 426128,
                "species_taxid": 426128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7554,
                "matched_fragments": 271,
                "total_fragments": 1528,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001854185.1",
                "gtdb_species": "s__Clostridium_W formicaceticum",
                "ani": 99.9972,
                "matched_fragments": 1528,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Clostridium_W",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001042715.1",
                "gtdb_species": "s__Clostridium_W aceticum",
                "ani": 83.9699,
                "matched_fragments": 913,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Clostridium_W",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000016985.1",
                "gtdb_species": "s__Alkaliphilus_A metalliredigens",
                "ani": 79.4198,
                "matched_fragments": 163,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Alkaliphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900188145.1",
                "gtdb_species": "s__Anaerovirgula multivorans",
                "ani": 78.6803,
                "matched_fragments": 441,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Anaerovirgula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018141165.1",
                "gtdb_species": "s__Alkaliphilus_B sp018141165",
                "ani": 78.3393,
                "matched_fragments": 109,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Alkaliphilus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100845.1",
                "gtdb_species": "s__Natronincola ferrireducens",
                "ani": 78.1246,
                "matched_fragments": 287,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Natronincola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111615.1",
                "gtdb_species": "s__Natronincola_A peptidivorans",
                "ani": 77.7533,
                "matched_fragments": 270,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Natronincola_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012521085.1",
                "gtdb_species": "s__JAAYNB01 sp012521085",
                "ani": 76.905,
                "matched_fragments": 89,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__JAAYNB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000621485.1",
                "gtdb_species": "s__Alkaliphilus transvaalensis",
                "ani": 76.6557,
                "matched_fragments": 107,
                "total_fragments": 1528,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Alkaliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.079,
        "cell_length": 0.698,
        "doubling_h": 0.353,
        "growth_tmp": 37.0,
        "optimum_tmp": 35.173,
        "optimum_ph": 6.947,
        "genome_size": 4569314.5,
        "gc_content": 35.5,
        "coding_genes": 4037.0,
        "rRNA16S_genes": 11.0,
        "tRNA_genes": 134.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.944,
        "thermophilic_range_tmp": 0.055,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Clostridium",
        "formicaceticum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}