{ "type": "genome", "identifier": "GCF_002081715.1", "organism": "Nocardia donostiensis", "title": "Nocardia donostiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002081715.1", "bioproject": "PRJNA224116", "biosample": "SAMN06246728", "wgs_master": "MUKP00000000.1", "refseq_category": "reference genome", "taxid": "1538463", "species_taxid": "1538463", "organism_name": "Nocardia donostiensis", "infraspecific_name": "strain=X1654", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/06", "asm_name": "ASM208171v1", "asm_submitter": "CDC", "gbrs_paired_asm": "GCA_002081715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/081/715/GCF_002081715.1_ASM208171v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5795920", "genome_size_ungapped": "5795920", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "120", "contig_count": "120", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002081715.1-RS_2024_07_27", "annotation_date": "2024-07-27", "total_gene_count": "5232", "protein_coding_gene_count": "5042", "non_coding_gene_count": "56", "pubmed_id": "26914251" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-06", "dateModified": "2017-04-06", "datePublished": "2017-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia donostiensis" ], "sample_taxid": [ "1538463" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "chronic obstructive pulmonary disease (COPD)" ], "sample_host_disease_id": [], 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}, { "organism_name": "Nocardia farcinica", "strain": "strain=DSM 43257", "accession": "GCA_900156775.1", "taxid": 37329, "species_taxid": 37329, "relation_to_type": "type", "validated": true, "ani": 80.6216, "matched_fragments": 943, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia amikacinitolerans", "strain": "strain=NBRC 108937", "accession": "GCA_001612615.1", "taxid": 756689, "species_taxid": 756689, "relation_to_type": "type", "validated": true, "ani": 80.4482, "matched_fragments": 905, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia pneumoniae", "strain": "strain=NBRC 100136", "accession": "GCA_000308755.1", "taxid": 228601, "species_taxid": 228601, "relation_to_type": "type", "validated": true, "ani": 80.4255, "matched_fragments": 956, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia amikacinitolerans", "strain": "strain=DSM 45539", "accession": "GCA_024172045.1", "taxid": 756689, "species_taxid": 756689, "relation_to_type": "type", "validated": true, "ani": 80.4135, "matched_fragments": 926, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia beijingensis", "strain": "strain=NBRC 16342", "accession": "GCA_001612785.1", "taxid": 95162, "species_taxid": 95162, "relation_to_type": "type", "validated": true, "ani": 80.3914, "matched_fragments": 936, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia araoensis", "strain": "strain=NBRC 100135", "accession": "GCA_000308435.1", "taxid": 228600, "species_taxid": 228600, "relation_to_type": "type", "validated": true, "ani": 80.3547, "matched_fragments": 908, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia barduliensis", "strain": "strain=335427", "accession": "GCA_013315795.1", 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885, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=ATCC 19247", "accession": "GCA_005863255.1", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9626, "matched_fragments": 884, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=NBRC 15531", "accession": "GCA_000308355.2", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9434, "matched_fragments": 882, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia bovistercoris", "strain": "strain=NEAU-351", "accession": "GCA_015674855.1", "taxid": 2785916, "species_taxid": 2785916, "relation_to_type": "type", "validated": true, "ani": 79.8075, "matched_fragments": 864, "total_fragments": 1864, "ani_threshold": 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